Browse Element(s) Details


Os.26802.2.S1_at

Description gb:AK061448.1
DB_XREF= gi:32971466
TID=Os.26802.2
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.26802 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-207-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-307-E03, full insert sequence.
FL= gb:AK061448.1 gb:AK106090.1 gb:AK099164.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0809011/11amino acid transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g08060OsAffx.23523.3.S1_at11/1112+4092623..4096609universal stress protein family protein
LOC_Os12g08060Os.45422.1.S1_x_at2/1112+4092623..4096609universal stress protein family protein
LOC_Os12g08070Os.53153.1.S1_at2/1112+4102232..4104818TRAF-type zinc finger family protein
LOC_Os12g08070Os.51244.1.S1_at1/1112+4102232..4104818TRAF-type zinc finger family protein
LOC_Os12g08080Os.41695.4.S1_x_at4/1112+4109141..4112917Transposable element protein, putative, MuDR
LOC_Os12g08080Os.41695.3.S1_x_at3/1112+4109141..4112917Transposable element protein, putative, MuDR
LOC_Os12g08080Os.41695.5.S1_x_at3/1112+4109141..4112917Transposable element protein, putative, MuDR
LOC_Os12g08080Os.41695.2.S1_x_at3/1112+4109141..4112917Transposable element protein, putative, MuDR
LOC_Os12g08090Os.26802.2.S1_at11/1112+4119914..4122046amino acid transporter, putative, expressed
LOC_Os12g08100Os.46306.1.S1_x_at3/1112+4126211..4129542transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g08110Os.45976.1.S1_x_at1/1112+4131874..4135599transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g08120OsAffx.31640.1.S1_at11/1112+4137588..4137797hypothetical protein
LOC_Os12g08130Os.26802.1.S1_at11/1112+4143608..4145607amino acid transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006865biological_processamino acid transport
GO:0015800biological_processacidic amino acid transport
GO:0015802biological_processbasic amino acid transport
GO:0015804biological_processneutral amino acid transport
GO:0015810biological_processL-aspartate transport
GO:0015827biological_processL-tryptophan transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015172molecular_functionacidic amino acid transporter activity
GO:0015174molecular_functionbasic amino acid transporter activity
GO:0015175molecular_functionneutral amino acid transporter activity
GO:0015359molecular_functionamino acid permease activity
GO:0015399molecular_functionprimary active transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26802.2.S1_at--676--1051Chr12:4121522..4121546 (25 bp)
AGGTGGGTCTCGCTCAAGACGCTCA
LOC_Os12g08090
Os.26802.2.S1_at--696--5791Chr12:4121606..4121630 (25 bp)
GACGCTCTCAAGGTGTACAGACCGT
LOC_Os12g08090
Os.26802.2.S1_at--359--7031Chr12:4121620..4121644 (25 bp)
GTACAGACCGTTCAGCGGATGATTG
LOC_Os12g08090
Os.26802.2.S1_at--1118--7591Chr12:4121654..4121678 (25 bp)
GGGCACGTGTGCTCGTTAAATTATT
LOC_Os12g08090
Os.26802.2.S1_at--175--10211Chr12:4121675..4121699 (25 bp)
TATTTCTTACTATCTCTGTACCAAA
LOC_Os12g08090
Os.26802.2.S1_at--422--5711Chr12:4121723..4121747 (25 bp)
GACGAAATTCGGGTAGTTCTCAGGT
LOC_Os12g08090
Os.26802.2.S1_at--438--6931Chr12:4121735..4121759 (25 bp)
GTAGTTCTCAGGTACGAATTCATCG
LOC_Os12g08090
Os.26802.2.S1_at--622--10151Chr12:4121793..4121817 (25 bp)
TATATTTTGGGTCAGCATTAGTACA
LOC_Os12g08090
Os.26802.2.S1_at--564--8591Chr12:4121857..4121881 (25 bp)
TGTGGCGTTTTTCATTGGAGACCTT
LOC_Os12g08090
Os.26802.2.S1_at--73--8731Chr12:4121891..4121915 (25 bp)
TGTAATTGCAGTAAACAGATTCCCT
LOC_Os12g08090
Os.26802.2.S1_at--1057--4711Chr12:4121969..4121993 (25 bp)
GCTGGAGGTGCTGTTTCTAATGTCA
LOC_Os12g08090
Target Sequence 
AGGTGGGTCTCGCTCAAGACGCTCAGCGCGTGCTGCCTCGTCGTCTCCATCGCCGCCGCTGCGGGCTCCATTGCTGACGT
CATCGACGCTCTCAAGGTGTACAGACCGTTCAGCGGATGATTGGAACGTGAGGGGCACGTGTGCTCGTTAAATTATTTCT
TACTATCTCTGTACCAAAATATAGCAAACTAGTATAAATAGGACGAAATTCGGGTAGTTCTCAGGTACGAATTCATCGTA
CTAGGAAATANCTCACATTGTATTAAGTTGCTATATTTTGGGTCAGCATTAGTACAATATTACACAAAGAGGAAAAAAAA
NNAANAAATGTAACATGTGGCGTTTTTCATTGGAGACCTTGAAAAATCTTGTAATTGCAGTAAACAGATTCCCTNCCGTT
GTGATCATTGCATTCCTTTNGCGAAAAAAAAGGNATGNAAATAGATGGCTGGAGGTGCTGTTTCTAATGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26802.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis