Browse Element(s) Details


Os.27235.2.S1_x_at

Description gb:NM_193239.1
DB_XREF= gi:34913561
GEN=OSJNBa0086A10.11
TID=Os.27235.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.27235 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0086A10.11 (OSJNBa0086A10.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0086A10.11 (OSJNBa0086A10.11), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3517010/11tRNA methyltransferase family protein, expressed
LOC_Os03g487101/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g35129NANA1+19769162..19769374hypothetical protein
LOC_Os01g35140OsAffx.447.1.S1_at3/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.46715.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.1.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140OsAffx.22947.2.S1_x_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35140Os.52609.1.S1_at1/111+19770126..19774676retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g35149NANA1+19777544..19777756hypothetical protein
LOC_Os01g35160Os.47962.1.S1_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.47962.1.S1_x_at11/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_x_at8/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35160Os.35785.1.S1_at5/111+19780987..19785158receptor-like protein kinase 4, putative, expressed
LOC_Os01g35170Os.27235.1.S1_at11/111+19793154..19795861tRNA methyltransferase family protein, expressed
LOC_Os01g35170Os.27235.2.S1_x_at10/111+19793154..19795861tRNA methyltransferase family protein, expressed
LOC_Os01g35184Os.41019.1.S1_at11/111+19796109..19804437CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35184OsAffx.8934.1.S1_x_at1/111+19796109..19804437CBL-interacting serine/threonine-protein kinase 24, putative, expressed
LOC_Os01g35200OsAffx.32056.1.S1_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.32056.1.S1_x_at11/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.30536.1.S1_x_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35200OsAffx.8676.1.S1_at1/111+19807511..19814522transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.3.S1_s_at11/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.1.S1_s_at11/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g35210OsAffx.10637.4.S1_s_at8/111+19816033..19819719transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27235.2.S1_x_at--576--2911Chr01:19793677..19793701 (25 bp)
AAGGAGGTGTTCGAGGATCCCCTGC
LOC_Os01g35170
Os.27235.2.S1_x_at--354--3331NONE
CACTCATGGTCGACATTGGCTGCAG
NONE
Os.27235.2.S1_x_at--662--8013Chr01:19793849..19793873 (25 bp)
GGAGGTTCTTGATTTGGCTTGCCAA
LOC_Os01g35170
Os.27235.2.S1_x_at--478--4591Chr01:19793889..19793913 (25 bp)
GCGAAACTACCTCGGCCTGGAGATT
LOC_Os01g35170
Os.27235.2.S1_x_at--856--7791Chr01:19794040..19794064 (25 bp)
GGTCGCAGTTCTGGGTAACCGAGTT
LOC_Os01g35170
Os.27235.2.S1_x_at--355--3011Chr01:19794189..19794213 (25 bp)
AATGCAACAGTGTCTTTCAACCAGA
LOC_Os01g35170
Os.27235.2.S1_x_at--21--10331Chr01:19794203..19794227 (25 bp)
TTTCAACCAGATTGCGTCGTCGTAC
LOC_Os01g35170
Os.27235.2.S1_x_at--459--2071Chr01:19794242..19794385 (25 bp)
ACTTGTTTCTATACTGTGTCCTGAT
LOC_Os01g35170
Os.27235.2.S1_x_at--220--8711Chr01:19794377..19794401 (25 bp)
TGTCCTGATCCCCATTTTAAGAAGA
LOC_Os01g35170
Os.27235.2.S1_x_at--1007--10031Chr01:19794465..19794860 (25 bp)
TAGGTGGACGGGTTCTTTTGCAATC
LOC_Os01g35170
Os.27235.2.S1_x_at--227--8011Chr01:19794967..19794991 (25 bp)
GGATGGCTTCTGGACAACCCAATGG
LOC_Os01g35170
Target Sequence 
AAGGAGGTGTTCGAGGATCCCCTGCTGCCACTCATGGTCGACATTGGCTGCAGCGGGAGGTTCTTGATTTGGCTTGCCAA
GAACTCCGGTGAAAGGCGAAACTACCTCGGCCTGGAGATTCGGCAGAAGTTGGTGGAGCGGTCGCAGTTCTGGGTAACCG
AGTTGGGGCTTAGGAATTATTTTATGTTTGCAAATGCAACAGTGTCTTTCAACCAGATTGCGTCGTCGTACCCTGGTCCC
CTGTCACTTGTTTCTATACTGTGTCCTGATCCCCATTTTAAGAAGAGGCATCACAAGAGAAGAGTTCTACAATCGCAGTT
GGTGGATTCAATCACAAATAACCTCTGTTTAGGTGGACGGGTTCTTTTGCAATCGGATGTACTCGAAGTGGCTGCAGACA
TGAGGGAAAGGTTTGATGAATACTCGGATGTGTTTGAGCATGTTGACTGTATTGATAAAGATCTTCGATGTGACAATGAA
GGATGGCTTCTGGACAACCCAATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27235.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis