Browse Element(s) Details

Os.27542.1.A1_at

Description

gb:AK062794.1
DB_XREF= gi:32972812
TID=Os.27542.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.27542 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-C06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C06, full insert sequence.
FL= gb:AK062794.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07923	11/11	expressed protein
LOC_Os06g08023	11/11	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os11g04790	4/11	hypothetical protein
LOC_Os11g36980	2/11	hypothetical protein
LOC_Os03g12870	1/11	hypothetical protein
LOC_Os09g12210	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07860	Os.3545.1.S1_at	11/11	6	+	3822022..3826345	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07869	OsAffx.27501.1.S1_at	9/11	6	+	3827205..3828962	hypothetical protein
LOC_Os06g07878	Os.4216.1.S1_at	11/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878	Os.4216.1.S1_a_at	11/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07878	Os.4216.2.S1_x_at	6/11	6	+	3831013..3832095	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07887	OsAffx.27499.3.S1_x_at	11/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07887	OsAffx.13617.1.S1_x_at	2/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07887	Os.51833.1.S1_x_at	1/11	6	+	3833300..3835514	Exostosin family protein
LOC_Os06g07896	OsAffx.27499.2.S1_at	11/11	6	+	3836429..3839148	ribosomal protein S15 containing protein
LOC_Os06g07905	Os.4754.1.S1_at	11/11	6	+	3839733..3843897	galactosyltransferase family protein, putative, expressed
LOC_Os06g07914	OsAffx.22569.2.S1_at	11/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	OsAffx.22569.2.S1_x_at	11/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07914	OsAffx.22569.1.S1_x_at	7/11	6	+	3845137..3846812	oxidoreductase, 2OG-Fe oxygenase family protein
LOC_Os06g07923	Os.27542.1.A1_at	11/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	Os.20904.1.S1_at	8/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07923	OsAffx.19206.1.S1_x_at	2/11	6	+	3851140..3853472	expressed protein
LOC_Os06g07932	Os.15663.1.S1_at	5/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07932	Os.10521.1.S1_at	2/11	6	+	3853649..3856371	oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os06g07941	Os.27693.1.S1_at	11/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07941	OsAffx.22569.1.S1_x_at	1/11	6	+	3857435..3859726	iron/ascorbate-dependent oxidoreductase, putative, expressed
LOC_Os06g07960	Os.3545.1.S1_at	11/11	6	+	3860286..3864403	Cystathionine beta-lyase, chloroplast precursor, putative, expressed
LOC_Os06g07969	Os.3546.1.S1_at	11/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07969	OsAffx.27501.1.S1_at	9/11	6	+	3865261..3867200	expressed protein
LOC_Os06g07978	Os.4216.1.S1_a_at	11/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.2.S1_x_at	6/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07978	Os.4216.1.S1_at	1/11	6	+	3869165..3869917	Proteasome subunit alpha type 4, putative
LOC_Os06g07987	OsAffx.27499.3.S1_x_at	11/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	OsAffx.13617.1.S1_x_at	2/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07987	Os.51833.1.S1_x_at	1/11	6	+	3871356..3873570	Exostosin family protein
LOC_Os06g07996	OsAffx.27499.2.S1_at	11/11	6	+	3874485..3877204	ribosomal protein S15 containing protein
LOC_Os06g08005	Os.4754.1.S1_at	11/11	6	+	3877872..3882078	galactosyltransferase family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0008152	biological_process	metabolism
GO:0009813	biological_process	flavonoid biosynthesis
GO:0010261	biological_process	organ senescence (sensu Magnoliophyta)
GO:0016491	molecular_function	oxidoreductase activity
GO:0016682	molecular_function	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
GO:0016706	molecular_function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.27542.1.A1_at--310--863	9	Chr11:2040582..2040606 (25 bp)	TGGTGGATGCCACGTGCTGCCATTT	LOC_Os11g04790
Os.27542.1.A1_at--431--191	12	Chr11:2040593..2040617 (25 bp)	ACGTGCTGCCATTTGTCTGTGTGGT	LOC_Os11g04790
Os.27542.1.A1_at--998--357	13	Chr11:2040602..2040626 (25 bp)	CATTTGTCTGTGTGGTGGTTCTGAG	LOC_Os11g04790
Os.27542.1.A1_at--909--851	8	Chr10:13883474..13883498 (25 bp)	TGGACGGCGATCTGCAGTCAAGGTT	NONE
Os.27542.1.A1_at--470--393	9	Chr06:3890575..3890599 (25 bp)	CGGCGATCTGCAGTCAAGGTTGTAG	LOC_Os06g08023
Os.27542.1.A1_at--88--943	2	Chr06:3890655..3890679 (25 bp)	TCGGGCGTCGTAATTTCCTTGGAGC	LOC_Os06g08023
Os.27542.1.A1_at--744--705	2	Chr06:3890664..3890688 (25 bp)	GTAATTTCCTTGGAGCGTTGTCGAG	LOC_Os06g08023
Os.27542.1.A1_at--171--855	9	Chr09:6917296..6917695 (25 bp)	TGGAGCGTTGTCGAGGGTTACCCTC	LOC_Os09g12210
Os.27542.1.A1_at--459--361	9	Chr11:2040766..2040790 (25 bp)	CTTGGCGAGCTTCTCTGGGTGAAAA	LOC_Os11g04790
Os.27542.1.A1_at--709--469	2	Chr06:3890832..3890856 (25 bp)	GCGGCGTTCGGCCACATTTAGCGGG	LOC_Os06g08023
Os.27542.1.A1_at--753--747	6	Chr09:6917911..6917935 (25 bp)	GTGTGTGGCAATGCACCTTGGTGCA	NONE

Target Sequence

TGGTGGATGCCACGTGCTGCCATTTGTCTGTGTGGTGGTTCTGAGTTGGTGGACGGCGATCTGCAGTCAAGGTTGTAGGG
TCCCAAGCGAAAGCCTAGTCCGGTGGTTCACCGGGCCGACAGCGGCTACGTCTTCGGGCGTCGTAATTTCCTTGGAGCGT
TGTCGAGGGTTACCCTCTCCCTTTCTTGGCGAGCTTCTCTGGGTGAAAACCACATCTTTTTAGATGGGCGATGGCGGCAT
CCTGGATGTCGTGACCACCATGGTGGCATCGTTTTCGGAGCCTCGTCTCTGTGGTGTTGCCGTAGGCCTAGCGGCGTTCG
GCCACATTTAGCGGGGGTCGTTTGGTGCTAGGTTTCACCCTCAGCGGTTTGTGCTTGGGTGGTAGTGTGTGGTGTGTGGC
AATGCACCTTGGTGCA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis