Browse Element(s) Details


Os.27569.4.S1_x_at

Description gb:AK120086.1
DB_XREF= gi:37989709
TID=Os.27569.4
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.27569 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023130K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013020J11, full insert sequence.
FL= gb:AK120086.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g037606/11expressed protein
LOC_Os12g026905/11expressed protein
LOC_Os12g016204/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g03720OsAffx.6984.1.S1_at8/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.2.S1_x_at3/1111+1444412..1447909expressed protein
LOC_Os11g03720Os.10763.1.S1_at1/1111+1444412..1447909expressed protein
LOC_Os11g03730Os.8403.1.S1_s_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03730Os.8403.1.S1_a_at11/1111+1452590..1459065Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03740OsAffx.6986.1.S1_at11/1111+1467904..1468522pectinesterase inhibitor domain containing protein, expressed
LOC_Os11g03750OsAffx.31565.1.S1_at11/1111+1470820..1471377pectinesterase inhibitor domain containing protein
LOC_Os11g03760Os.17651.1.S1_at11/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_x_at10/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.1.S1_a_at9/1111+1471914..1476591expressed protein
LOC_Os11g03760Os.27569.4.S1_x_at6/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_x_at2/1111+1471914..1476591expressed protein
LOC_Os11g03760OsAffx.7471.1.S1_at1/1111+1471914..1476591expressed protein
LOC_Os11g03770OsAffx.30802.1.S1_at11/1111+1480581..1481553hypothetical protein
LOC_Os11g03780Os.5087.1.S1_at11/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780OsAffx.7470.1.S1_x_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03780Os.51413.1.S1_at1/1111+1483074..1490764Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os11g03794Os.8596.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.19474.1.S1_at11/1111+1490964..1496196expressed protein
LOC_Os11g03794OsAffx.18657.1.S1_at2/1111+1490964..1496196expressed protein
LOC_Os11g03810OsAffx.24436.3.S1_at9/1111+1500738..1504746hypothetical protein
LOC_Os11g03810OsAffx.7475.1.S1_at3/1111+1500738..1504746hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27569.4.S1_x_at--700--755Chr12:18326631..18326655 (25 bp)
ATGTCAGGCAAATACTATCAAGTTC
NONE
Os.27569.4.S1_x_at--700--7835Chr12:18326698..18326722 (25 bp)
GGTAACCACACTTGATTTTGACATG
NONE
Os.27569.4.S1_x_at--1118--9771Chr12:18326788..18326812 (25 bp)
TAAGTGTTGATGCTCTTGCGACCTG
NONE
Os.27569.4.S1_x_at--51--10713Chr12:18326803..18326827 (25 bp)
TTGCGACCTGATCTCTGCAACTCAG
NONE
Os.27569.4.S1_x_at--588--5154Chr12:18326819..18326843 (25 bp)
GCAACTCAGATCCTGTACTGTTTCA
NONE
Os.27569.4.S1_x_at--776--7876Chr12:18326852..18326876 (25 bp)
GGTTATCCTGTTTACTTTTACTATG
NONE
Os.27569.4.S1_x_at--304--5171Chr12:18326967..18326991 (25 bp)
GCAAGCAGAACATGGTTGATGAGTT
NONE
Os.27569.4.S1_x_at--586--6254Chr12:18327038..18327062 (25 bp)
GATGGTTTAGTTTTGTATGCGGTTA
NONE
Os.27569.4.S1_x_at--229--9892Chr12:18327085..18327109 (25 bp)
TACTTGTAAAAAACTTGCCATGAGC
NONE
Os.27569.4.S1_x_at--584--10695Chr12:18327099..18327123 (25 bp)
TTGCCATGAGCACGTATATTTGTAT
NONE
Os.27569.4.S1_x_at--518--3171NONE
AATTGTCAAATGTTCCAGGGTCGTC
NONE
Target Sequence 
ATGTCAGGCAAATACTATCAAGTTCNTTGTTCATCTTTTGATATCAACAGATGTACTCATTTTTTTTGGTAACCACACTT
GATTTTGACATGATCAAGTTTTTATATGAAACNGATACACTNTGCACTTGNTCCTTTGGTAAAGATAATACTNCTATTAA
GTGTTGATGCTCTTGCGACCTGATCTCTGCAACTCAGATCCTGTACTGTTTCAAAGGTACAGGTTATCCTGTTTACTTTT
ACTATGTTTCAGGAAAATGTGATAATGGAAAAACTTGTGAGATCAAGTGTAGATATACTAAGGTTGATNAGTTTGAAGCA
ATCTGTACAAAAGCTTGCAAGCAGAACATGGTTGATGAGTTTGAAGCAATCTGTNCAAAAGCTTGCAAGCAGAACATAGC
TGAAACAGATGGTTTAGTTTTGTATGCGGTTACTAATTTGTTTATCANATTGGTTACTTGTAAAAAACTTGCCATGAGCA
CGTATATTTGTATGTTTGTTTTGAATTGTCAAATGTTCCAGGGTCGTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27569.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis