Browse Element(s) Details


Os.2764.1.S1_s_at

Description gb:AK100907.1
DB_XREF= gi:32986116
TID=Os.2764.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132F01, full insert sequence.
FL= gb:AK100907.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1635011/113-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os10g4221011/113-hydroxyisobutyryl-coenzyme A hydrolase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16310OsAffx.26046.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16310Os.52323.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16310OsAffx.20940.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16320OsAffx.24242.2.S1_at3/1112+9330425..9332427hypothetical protein
LOC_Os12g16320Os.31929.11.S1_x_at1/1112+9330425..9332427hypothetical protein
LOC_Os12g16330OsAffx.26082.3.S1_at2/1112+9337960..9338496retrotransposon protein, putative, unclassified
LOC_Os12g16340OsAffx.20677.1.S1_at6/1112+9341522..9348092retrotransposon protein, putative, unclassified, expressed
LOC_Os12g16340OsAffx.19702.1.S1_x_at1/1112+9341522..9348092retrotransposon protein, putative, unclassified, expressed
LOC_Os12g16350Os.2764.1.S1_s_at11/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350Os.2764.2.S1_x_at11/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350OsAffx.30751.1.S1_at11/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350OsAffx.19702.1.S1_x_at8/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350OsAffx.19702.1.S1_at7/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350Os.5582.2.S1_x_at4/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350Os.47000.1.S1_x_at4/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16350Os.763.1.S1_at1/1112+9348274..93629903-hydroxyisobutyryl-coenzyme A hydrolase, putative, expressed
LOC_Os12g16360Os.51159.1.S1_at11/1112+9372347..9373384expressed protein
LOC_Os12g16370NANA12+9374429..9374710hypothetical protein
LOC_Os12g16380NANA12+9375600..9378693transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16390Os.45902.1.A1_x_at4/1112+9380407..9382020Zinc knuckle family protein
LOC_Os12g16390Os.56372.1.S1_at1/1112+9380407..9382020Zinc knuckle family protein
LOC_Os12g16400Os.47463.1.S1_x_at5/1112+9382878..9386593transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g16400Os.14491.2.S1_x_at4/1112+9382878..9386593transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006574biological_processvaline catabolism
GO:0006635biological_processfatty acid beta-oxidation
GO:0008152biological_processmetabolism
GO:0009733biological_processresponse to auxin stimulus
GO:0003824molecular_functioncatalytic activity
GO:0003860molecular_function3-hydroxyisobutyryl-CoA hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2764.1.S1_s_at--872--2792Chr12:9362420..9362444 (25 bp)
AAGATTTGGACCTACCTCCTAGACG
LOC_Os12g16350
Os.2764.1.S1_s_at--998--6492Chr12:9362422..9362446 (25 bp)
GATTTGGACCTACCTCCTAGACGTT
LOC_Os12g16350
Os.2764.1.S1_s_at--650--9972Chr12:9362432..9362456 (25 bp)
TACCTCCTAGACGTTCCCATGGAAG
LOC_Os12g16350
Os.2764.1.S1_s_at--97--4292Chr12:9362434..9362458 (25 bp)
CCTCCTAGACGTTCCCATGGAAGGA
LOC_Os12g16350
Os.2764.1.S1_s_at--164--10032Chr12:9362439..9362463 (25 bp)
TAGACGTTCCCATGGAAGGAGGCTT
LOC_Os12g16350
Os.2764.1.S1_s_at--930--5732Chr12:9362441..9362465 (25 bp)
GACGTTCCCATGGAAGGAGGCTTGT
LOC_Os12g16350
Os.2764.1.S1_s_at--720--4032Chr12:9362443..9362467 (25 bp)
CGTTCCCATGGAAGGAGGCTTGTTC
LOC_Os12g16350
Os.2764.1.S1_s_at--216--10652Chr12:9362445..9362469 (25 bp)
TTCCCATGGAAGGAGGCTTGTTCCC
LOC_Os12g16350
Os.2764.1.S1_s_at--399--4172Chr12:9362447..9362471 (25 bp)
CCCATGGAAGGAGGCTTGTTCCCAA
LOC_Os12g16350
Os.2764.1.S1_s_at--877--3492Chr12:9362449..9362473 (25 bp)
CATGGAAGGAGGCTTGTTCCCAAGC
LOC_Os12g16350
Os.2764.1.S1_s_at--1074--832Chr12:9362450..9362474 (25 bp)
ATGGAAGGAGGCTTGTTCCCAAGCT
LOC_Os12g16350
Target Sequence 
AAGATTTGGACCTACCTCCTAGACGTTCCCATGGAAGGAGGCTTGTTCCCAAGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2764.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis