Browse Element(s) Details


Os.27845.1.S1_x_at

Description gb:CB631634
DB_XREF= gi:29626623
DB_XREF=OSIIEb09E11.r
CLONE=OSIIEb09E11
TID=Os.27845.1
CNT=5
FEA=mRNA
TIER=ConsEnd
STK=3
UG=Os.27845 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 5, At5g17370 (P0585H11.14), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0173011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01670OsAffx.16032.1.S1_at11/117+405686..405889hypothetical protein
LOC_Os07g01680OsAffx.16033.1.S1_at11/117+411226..411888Dirigent-like protein
LOC_Os07g01690NANA7+413199..413553hypothetical protein
LOC_Os07g01700OsAffx.28224.1.S1_at11/117+417244..417748hypothetical protein
LOC_Os07g01710Os.11806.1.S1_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01710Os.11806.2.S1_x_at11/117+423271..426822Leucine Rich Repeat family protein, expressed
LOC_Os07g01720Os.19340.1.S1_at11/117+427110..429906expressed protein
LOC_Os07g01730Os.27845.1.S1_x_at11/117+430383..435851expressed protein
LOC_Os07g01740Os.44564.1.S1_at11/117+436501..438003expressed protein
LOC_Os07g01740OsAffx.16034.1.S1_at10/117+436501..438003expressed protein
LOC_Os07g01750OsAffx.22519.1.S1_at11/117+438728..443413MATE efflux family protein, expressed
LOC_Os07g01760Os.11824.1.S1_a_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01760Os.11824.1.S1_x_at11/117+444477..449817Alanine aminotransferase 2, putative, expressed
LOC_Os07g01770Os.33732.3.S1_x_at11/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01770Os.33732.1.S1_at10/117+450047..452356C2 domain-containing protein, putative, expressed
LOC_Os07g01780Os.33732.2.S1_at9/117+456037..458517expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27845.1.S1_x_at--146--9551Chr07:434535..434559 (25 bp)
TCATTTACCACTTGTTGTCGATCCC
LOC_Os07g01730
Os.27845.1.S1_x_at--489--8971Chr07:434562..434583 (22 bp)
TGAAACCCTTCTTATGTCAGGTGGG
LOC_Os07g01730
Os.27845.1.S1_x_at--730--8571Chr07:435379..435403 (25 bp)
TGGTTCACTATTCACGGCACTTTGC
LOC_Os07g01730
Os.27845.1.S1_x_at--41--5571Chr07:435410..435434 (25 bp)
GAAAGCGGCTGCGACTTGCACAATT
LOC_Os07g01730
Os.27845.1.S1_x_at--490--3291Chr07:435428..435452 (25 bp)
CACAATTCTTCGCTGTTCGGTGTAA
LOC_Os07g01730
Os.27845.1.S1_x_at--374--4151Chr07:435480..435504 (25 bp)
CGCGTGATGGTCTGTTCTATGTGCA
LOC_Os07g01730
Os.27845.1.S1_x_at--810--2671Chr07:435513..435537 (25 bp)
AAGCGACTGATGGTACTGACTCAAG
LOC_Os07g01730
Os.27845.1.S1_x_at--799--1671Chr07:435536..435560 (25 bp)
AGCCATGATGGCTCTACTGGTGTTA
LOC_Os07g01730
Os.27845.1.S1_x_at--525--831Chr07:435584..435608 (25 bp)
ATGGACTGAGTTCTTTGCTGCTGGA
LOC_Os07g01730
Os.27845.1.S1_x_at--210--10711Chr07:435598..435622 (25 bp)
TTGCTGCTGGAGAGTTGACGCTAAC
LOC_Os07g01730
Os.27845.1.S1_x_at--617--3731Chr07:435618..435642 (25 bp)
CTAACGTTACTGGAGCTGTGTGCAC
LOC_Os07g01730
Target Sequence 
TCATTTACCACTTGTTGTCGATCCCTCTGAAACCCTTCTTATGTCAGGTGGGGAAGACAGAATGGTTCGAATTTGGAGTA
TAAAAACGGGCGAGCAAATATTTGCACAGAGTGTGGCTGGTTCACTATTCACGGCACTTTGCTGGCCAGAAAGCGGCTGC
GACTTGCACAATTCTTCGCTGTTCGGTGTAAATCACAGTTGGGGGGCTTGGATGGGATCGCGTGATGGTCTGTTCTATGT
GCATGGTACTTAAGCGACTGATGGTACTGACTCAAGCCATGATGGCTCTACTGGTGTTATGTACATAAGCATATAAGGAG
CGATGGACTGAGTTCTTTGCTGCTGGAGAGTTGACGCTAACGTTACTGGAGCTGTGTGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27845.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis