Browse Element(s) Details


Os.27854.1.S2_at

Description gb:AY374122.1
DB_XREF= gi:34761153
TID=Os.27854.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27854 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) SCC3 mRNA, complete cds.
PROD=SCC3
FL= gb:AY374122.1 gb:AK100219.1 gb:AK069089.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0962010/11Sister-chromatide cohesion protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g09560OsAffx.14614.1.S1_at11/115+5380459..5382051hypothetical protein
LOC_Os05g09560Os.50120.1.S1_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09560OsAffx.16028.1.S1_x_at1/115+5380459..5382051hypothetical protein
LOC_Os05g09570OsAffx.29789.3.S1_x_at11/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.29789.1.S1_x_at6/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09570OsAffx.31885.2.S1_x_at2/115+5384844..5389267hAT family dimerisation domain containing protein
LOC_Os05g09580Os.6629.1.S1_at11/115+5394193..5395440expressed protein
LOC_Os05g09590OsAffx.18706.1.S1_at11/115+5396502..5397083hypothetical protein
LOC_Os05g09600Os.53133.1.S1_x_at11/115+5398730..5399338expressed protein
LOC_Os05g09600Os.53133.1.S1_at11/115+5398730..5399338expressed protein
LOC_Os05g09600OsAffx.14615.1.S1_at1/115+5398730..5399338expressed protein
LOC_Os05g09610OsAffx.4290.1.S1_at11/115+5402141..5402857hypothetical protein
LOC_Os05g09620Os.27854.1.S1_at11/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09620Os.27854.1.S2_at10/115+5403694..5412411Sister-chromatide cohesion protein, putative, expressed
LOC_Os05g09630Os.23760.2.S1_x_at11/115+5420780..5424285expressed protein
LOC_Os05g09630Os.23760.1.S1_at7/115+5420780..5424285expressed protein
LOC_Os05g09640OsAffx.14616.1.S1_at11/115+5426193..5427430Leucine Rich Repeat family protein, expressed
LOC_Os05g09650Os.49179.1.S1_at3/115+5429455..5431324Ubiquinone biosynthesis protein COQ4 homolog, putative, expressed
LOC_Os05g09660OsAffx.16862.1.S1_at2/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.29326.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed
LOC_Os05g09660OsAffx.17706.1.S1_at1/115+5434886..5441004HAD superfamily phosphatase containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27854.1.S2_at--17--1891Chr05:5411731..5411755 (25 bp)
ACGATGACGCAGATCAGCCTCTGAT
LOC_Os05g09620
Os.27854.1.S2_at--854--6451Chr05:5411753..5411777 (25 bp)
GATCAACACGTTTAGGTCTTCCGCA
LOC_Os05g09620
Os.27854.1.S2_at--76--10671Chr05:5411771..5411795 (25 bp)
TTCCGCATCCAAGCTAAGATCACTG
LOC_Os05g09620
Os.27854.1.S2_at--158--2291NONE
AAAGGACCTTCGAGGGCATCAGGAA
NONE
Os.27854.1.S2_at--124--311Chr05:5411994..5412018 (25 bp)
ATAGCTGAGGGCACGCACTGACGTC
LOC_Os05g09620
Os.27854.1.S2_at--219--5731Chr05:5412013..5412037 (25 bp)
GACGTCGTTACGCATGACTGAACTT
LOC_Os05g09620
Os.27854.1.S2_at--245--5051Chr05:5412051..5412075 (25 bp)
GCAGCAGATTTGTGGCGTTGTAGAT
LOC_Os05g09620
Os.27854.1.S2_at--222--731Chr05:5412074..5412098 (25 bp)
ATGATTTGTACCTAGGTGCTCACCC
LOC_Os05g09620
Os.27854.1.S2_at--570--10471Chr05:5412137..5412161 (25 bp)
TTACCCCTTCGCCATGTATATTATG
LOC_Os05g09620
Os.27854.1.S2_at--421--3051Chr05:5412184..5412208 (25 bp)
AATCGCATGTTGCATTGTACCAATT
LOC_Os05g09620
Os.27854.1.S2_at--554--8851Chr05:5412209..5412233 (25 bp)
TGATCGATGTATTTCTCCTGGGTTC
LOC_Os05g09620
Target Sequence 
ACGATGACGCAGATCAGCCTCTGATCAACACGTTTAGGTCTTCCGCATCCAAGCTAAGATCACTGAAGGTTTCTCAGCAA
GGAACAAGCGGTCAGAAAGGACCTTCGAGGGCATCAGGAAGCAATAGCTGAGGGCACGCACTGACGTCGTTACGCATGAC
TGAACTTGGCACAAATGAATGCAGCAGATTTGTGGCGTTGTAGATGATTTGTACCTAGGTGCTCACCCTTTTGGTAAACA
ACGTGACATAGACATTTGTTAGGTTTTTACCCCTTCGCCATGTATATTATGTTCAGTAATAATATATGTAGAAAATCGCA
TGTTGCATTGTACCAATTTGATCGATGTATTTCTCCTGGGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27854.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis