Browse Element(s) Details


Os.28110.1.S1_x_at

Description gb:AK058733.1
DB_XREF= gi:32968751
TID=Os.28110.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28110 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013163N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-F12, full insert sequence.
FL= gb:AK058733.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5571011/11transposon protein, putative, unclassified, expressed
LOC_Os03g261001/11transposon protein, putative, unclassified
LOC_Os04g514201/11transposon protein, putative, unclassified
LOC_Os02g331601/11transposon protein, putative, unclassified
LOC_Os01g556201/11transposon protein, putative, unclassified
LOC_Os04g461501/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55670OsAffx.26618.1.S1_at11/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55670Os.329.1.S1_at10/114+32918005..32921083glycosyltransferase, putative, expressed
LOC_Os04g55680NANA4+32926304..32928135UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os04g55690Os.27113.1.S1_at11/114+32928371..32930991expressed protein
LOC_Os04g55700Os.52910.1.S1_at11/114+32930954..32934210exonuclease family protein, expressed
LOC_Os04g55710Os.28110.1.S1_x_at11/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.4.S1_x_at10/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710Os.28110.3.S1_at8/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55710OsAffx.13041.1.S1_x_at2/114+32942472..32945722transposon protein, putative, unclassified, expressed
LOC_Os04g55720Os.5551.1.S1_at10/114+32947986..32950859D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g55730Os.12617.1.S1_at1/114+32951733..32960051Alpha-N-acetylglucosaminidase family protein, expressed
LOC_Os04g55740Os.55918.1.S1_at10/114+32960579..32962349Peroxidase 2 precursor, putative, expressed
LOC_Os04g55750OsAffx.26619.1.S1_at11/114+32966745..32967821hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28110.1.S1_x_at--977--4491Chr04:32945072..32945096 (25 bp)
GCCGTCGACTACTGCGTCAAGAAGC
LOC_Os04g55710
Os.28110.1.S1_x_at--915--9691Chr04:32945088..32945112 (25 bp)
TCAAGAAGCGGCTCGACGAAGGGTT
LOC_Os04g55710
Os.28110.1.S1_x_at--15--7697Chr12:25833791..25833815 (25 bp)
GGGTTCAACTGCACCGGCATGTTCA
NONE
Os.28110.1.S1_x_at--108--3951Chr04:32945170..32945194 (25 bp)
CGGCATGTTCAGAGGGTGCGCCACC
LOC_Os04g55710
Os.28110.1.S1_x_at--763--7771Chr04:32945184..32945208 (25 bp)
GGTGCGCCACCGAGGACGGATTCAT
LOC_Os04g55710
Os.28110.1.S1_x_at--562--5751Chr04:32945198..32945222 (25 bp)
GACGGATTCATGGAGGTCGGCATCT
LOC_Os04g55710
Os.28110.1.S1_x_at--1121--7551Chr04:32945259..32945283 (25 bp)
GGGCCTGTGGCCATCATGCGATTGC
LOC_Os04g55710
Os.28110.1.S1_x_at--908--9111Chr04:32945275..32945299 (25 bp)
TGCGATTGCCATAGAGTGGTGTCTT
LOC_Os04g55710
Os.28110.1.S1_x_at--390--9311Chr04:32945316..32945340 (25 bp)
TCCCGTGTGTTCGTGGGCTAGAATT
LOC_Os04g55710
Os.28110.1.S1_x_at--571--7731Chr04:32945375..32945399 (25 bp)
GGTGGGCTTGAATAATGACGATGAT
LOC_Os04g55710
Os.28110.1.S1_x_at--1111--6291Chr04:32945394..32945418 (25 bp)
GATGATGGCGATAATTCGTCTGGAA
LOC_Os04g55710
Target Sequence 
GCCGTCGACTACTGCGTCAAGAAGCGGCTCGACGAAGGGTTCGCGGGGCTCATCGCCGTGTCCAGCACGGGCGAGGTGGC
GTACGGGTTCAACTGCACCGGCATGTTCAGAGGGTGCGCCACCGAGGACGGATTCATGGAGGTCGGCATCTGGGAGTGAG
GTGGGCAGCCTTTGTGCGTGCGTGCGTGGGCCTGTGGCCATCATGCGATTGCCATAGAGTGGTGTCTTGGGGTCATGGGC
CGCCTCCCGTGTGTTCGTGGGCTAGAATTAGTGGGTATTAATTAGTGGATTGGGGAGATTGGAGGTGGGCTTGAATAATG
ACGATGATGGCGATAATTCGTCTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28110.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis