Browse Element(s) Details


Os.28382.1.S2_at

Description gb:AK065904.1
DB_XREF= gi:32975922
TID=Os.28382.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28382 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013046O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013046O14, full insert sequence.
FL= gb:AK065904.1 gb:AK062998.1 gb:AK061915.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2663011/11SAP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g26590Os.54920.1.S1_at11/113+15167875..15174618expressed protein
LOC_Os03g26590Os.38751.1.A1_at3/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.30274.1.A1_x_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.28492.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.1198.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26590OsAffx.19660.1.S1_at1/113+15167875..15174618expressed protein
LOC_Os03g26610Os.46055.2.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26610Os.10827.1.S1_x_at3/113+15182818..15185824transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g26620Os.53235.1.S1_at11/113+15187636..15189300Chalcone and stilbene synthases, C-terminal domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S2_at11/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26630Os.28382.1.S1_at10/113+15192959..15197832SAP domain containing protein, expressed
LOC_Os03g26650Os.52885.1.S1_at11/113+15202779..15204368heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os03g26660OsAffx.25238.1.S1_at11/113+15208695..15208943hypothetical protein
LOC_Os03g26670OsAffx.25239.1.S1_at11/113+15211105..15211572hypothetical protein
LOC_Os03g26680OsAffx.25243.2.S1_at11/113+15214274..15214832hypothetical protein
LOC_Os03g26690OsAffx.11259.1.S1_at1/113+15216866..15221596hypothetical protein
LOC_Os03g26704OsAffx.22699.1.S1_x_at2/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.19306.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.20414.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.31697.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified
LOC_Os03g26704OsAffx.22603.1.S1_at1/113+15221952..15228694retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28382.1.S2_at--95--8191Chr03:15193535..15193559 (25 bp)
GGAACCTCCTGTTGTGACACTCGAT
LOC_Os03g26630
Os.28382.1.S2_at--573--5631Chr03:15193520..15193544 (25 bp)
GACACTCGATGATCTCTTCAGGAAG
LOC_Os03g26630
Os.28382.1.S2_at--1027--2751Chr03:15193498..15193522 (25 bp)
AAGACACATTCTTCTCCTAGGATTT
LOC_Os03g26630
Os.28382.1.S2_at--459--7931Chr03:15193479..15193503 (25 bp)
GGATTTATTACCTTCCTTTATCAGA
LOC_Os03g26630
Os.28382.1.S2_at--50--1691Chr03:15193442..15193466 (25 bp)
AGCCAAGCTTGCTTCACAGGGCAAA
LOC_Os03g26630
Os.28382.1.S2_at--1160--2071Chr03:15193340..15193364 (25 bp)
ACATACTTGCATGTGTACGCTGCAG
LOC_Os03g26630
Os.28382.1.S2_at--1128--5991Chr03:15193304..15193328 (25 bp)
GAGAGCCTGAGATCTTTCTTCCTAA
LOC_Os03g26630
Os.28382.1.S2_at--831--8331Chr03:15193212..15193236 (25 bp)
GGCGGCGACTGCTGTTAGGTATTTT
LOC_Os03g26630
Os.28382.1.S2_at--612--731Chr03:15193125..15193149 (25 bp)
ATGTTTTTTGTTCTATCACTGTCTA
LOC_Os03g26630
Os.28382.1.S2_at--407--8711Chr03:15193106..15193130 (25 bp)
TGTCTAGTGTGTTGCGTCTAACTCT
LOC_Os03g26630
Os.28382.1.S2_at--561--2531Chr03:15193087..15193111 (25 bp)
AACTCTTGTTACTTGGAACGTCTGA
LOC_Os03g26630
Target Sequence 
GGAACCTCCTGTTGTGACACTCGATGATCTCTTCAGGAAGACACATTCTTCTCCTAGGATTTATTACCTTCCTTTATCAG
AAGAGGAAGTGGCAGCCAAGCTTGCTTCACAGGGCAAAGGCAAGAGAGAATGAGGAGCTGTAGCCTCTTTTTTTCTTGTC
GCTAGTATGGGGGCATGTGGAGGTATGTAGTGGTTACATACTTGCATGTGTACGCTGCAGGTTGTAGGGCTGAGAGCCTG
AGATCTTTCTTCCTAACTTTCCAGGAAAAATGGTGTATTACAGCTCAGCAGCTGGCTCTTGCAGTTCATTTGAAATAACA
GGAGGCGGCGACTGCTGTTAGGTATTTTGCTGCAAGAGAGAGTAGCTGTAGGCTAGTGTAGAAGCAGCAAATGTATTTTC
TACAGAAGGAATGTTTTTTGTTCTATCACTGTCTAGTGTGTTGCGTCTAACTCTTGTTACTTGGAACGTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28382.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis