Browse Element(s) Details


Os.28395.1.S1_x_at

Description gb:AK071208.1
DB_XREF= gi:32981231
TID=Os.28395.1
CNT=14
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28395 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023088N10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023088N10, full insert sequence.
FL= gb:AK071208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1060011/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10530Os.54540.1.S1_at10/112+5548055..5549534expressed protein
LOC_Os02g10540Os.25094.1.A1_at11/112+5550089..5552103Ribosomal protein L7/L12 C-terminal domain containing protein, expressed
LOC_Os02g10550OsAffx.11976.2.S1_s_at11/112+5554686..5556179NB-ARC domain containing protein, expressed
LOC_Os02g10560OsAffx.2566.1.S1_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.2566.1.S1_x_at10/112+5560274..5561053hypothetical protein
LOC_Os02g10560OsAffx.3289.2.A1_at1/112+5560274..5561053hypothetical protein
LOC_Os02g10570OsAffx.2567.1.S1_at11/112+5561298..5563775hypothetical protein
LOC_Os02g10570OsAffx.16205.1.S1_at1/112+5561298..5563775hypothetical protein
LOC_Os02g10580OsAffx.11976.1.S1_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10580OsAffx.11976.2.S1_s_at11/112+5566073..5567620NB-ARC domain containing protein, expressed
LOC_Os02g10590Os.52104.1.S1_at11/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_x_at2/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10590OsAffx.29478.1.S1_at1/112+5567953..5569801peptidyl-prolyl cis-trans isomerase, FKBP-type family protein, expressed
LOC_Os02g10600OsAffx.11977.1.S1_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10600Os.28395.1.S1_x_at11/112+5573182..5578000F-box protein interaction domain containing protein, expressed
LOC_Os02g10614OsAffx.24188.1.S1_at11/112+5584279..5586144expressed protein
LOC_Os02g10614OsAffx.24188.1.S1_x_at11/112+5584279..5586144expressed protein
LOC_Os02g10630Os.16187.1.S1_at9/112+5586959..5593645C2 domain containing protein, expressed
LOC_Os02g10640Os.292.1.S1_a_at11/112+5595400..560085226S protease regulatory subunit S10B, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28395.1.S1_x_at--938--7491Chr02:5575912..5575936 (25 bp)
GTGGTCCTCAGCAGTTGTGCAATCC
LOC_Os02g10600
Os.28395.1.S1_x_at--246--8691Chr02:5575927..5575951 (25 bp)
TGTGCAATCCTCCAAGCGGGCGAAG
LOC_Os02g10600
Os.28395.1.S1_x_at--40--5311Chr02:5575985..5576009 (25 bp)
GAAGGCACAAGCAAGATTCAGCAGG
LOC_Os02g10600
Os.28395.1.S1_x_at--1039--9751Chr02:5576020..5576044 (25 bp)
TAATCTCTTTGGACTGTGCAGCAGC
LOC_Os02g10600
Os.28395.1.S1_x_at--627--3391Chr02:5576041..5576065 (25 bp)
CAGCTTGAAGCTACCTACCTACATT
LOC_Os02g10600
Os.28395.1.S1_x_at--936--8591Chr02:5576080..5576104 (25 bp)
TGGTCTTTGTATATGCCTATGGCAG
LOC_Os02g10600
Os.28395.1.S1_x_at--5--5071Chr02:5576112..5576136 (25 bp)
GCAGCTATTAGCAGTTTATGAGTAA
LOC_Os02g10600
Os.28395.1.S1_x_at--144--711Chr02:5576129..5576153 (25 bp)
ATGAGTAATGCCTATCTTGGAGAGA
LOC_Os02g10600
Os.28395.1.S1_x_at--232--731Chr02:5576243..5576267 (25 bp)
ATGTTTTGCTTTGCTTAAGCCCCTG
LOC_Os02g10600
Os.28395.1.S1_x_at--120--1251Chr02:5576349..5576373 (25 bp)
AGTTGTAAACTGTATGCCTCCATTG
LOC_Os02g10600
Os.28395.1.S1_x_at--1147--4311Chr02:5576368..5576392 (25 bp)
CCATTGCACCTGGAGCATCAGTTAA
LOC_Os02g10600
Target Sequence 
GTGGTCCTCAGCAGTTGTGCAATCCTCCAAGCGGGCGAAGAGAACAATAAACTTAGTGTGGAAGATGTATACAGAAGGCA
CAAGCAAGATTCAGCAGGGGCTATGAAATAATCTCTTTGGACTGTGCAGCAGCTTGAAGCTACCTACCTACATTCCANCA
AAAGCTATTGGTCTTTGTATATGCCTATGGCAGAGAAGAAGCAGCTATTAGCAGTTTATGAGTAATGCCTATCTTGGAGA
GAAAAAGGTACACCATGGAAGTGGTTTGGTAATTTGGACAGAAGATAAAGATCAGAAAAGATACAGTGATATGTTAATGT
GTATTTCACATATGTTTTGCTTTGCTTAAGCCCCTGCCTATGGGGGCCTTTATACCAGAAAATGGAAAGCTATATGAAAT
AAACCTGTATGATTAAGGTACTCTTGTTTTGATTTGTAGTTGTAAACTGTATGCCTCCATTGCACCTGGAGCATCAGTTA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28395.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis