Browse Element(s) Details


Os.28495.1.S1_at

Description gb:AK111468.1
DB_XREF= gi:32996677
TID=Os.28495.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.28495 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBb0015I22.27 (OSJNBb0015I22.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-D12, full insert sequence.
FL= gb:AK111468.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2687011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26860OsAffx.28610.5.S1_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.5.S1_x_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.4.S1_s_at11/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.2.S1_at10/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.2.S1_x_at9/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.1.S1_at7/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.1.S1_x_at6/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.4.S1_x_at2/117+15541009..15544183hypothetical protein
LOC_Os07g26860OsAffx.28610.3.S1_at2/117+15541009..15544183hypothetical protein
LOC_Os07g26860Os.4760.1.S1_at1/117+15541009..15544183hypothetical protein
LOC_Os07g26870Os.28495.1.S1_at11/117+15558647..15560238Cytochrome P450 family protein, expressed
LOC_Os07g26880OsAffx.16430.2.S1_s_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.2.S1_at11/117+15564784..15565477hypothetical protein
LOC_Os07g26880OsAffx.16430.1.S1_at4/117+15564784..15565477hypothetical protein
LOC_Os07g26890NANA7+15570092..15570316hypothetical protein
LOC_Os07g26900OsAffx.28611.1.S1_at11/117+15578389..15582560Alpha-galactosidase precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.28495.1.S1_at--690--9971Chr07:15559758..15559782 (25 bp)
TACCTGCTGGCGCACACGGTGGACC
LOC_Os07g26870
Os.28495.1.S1_at--771--1071Chr07:15559822..15559846 (25 bp)
AGGGAGCCATTGTCAACTACGCGGT
LOC_Os07g26870
Os.28495.1.S1_at--1006--9451Chr07:15560025..15560049 (25 bp)
TCTGTCCTGCACTTGTTCGTCGGCA
LOC_Os07g26870
Os.28495.1.S1_at--1120--9391Chr07:15560041..15560065 (25 bp)
TCGTCGGCAGGTTGGTCGAACAGTT
LOC_Os07g26870
Os.28495.1.S1_at--215--9351Chr07:15560107..15560131 (25 bp)
TCGACTTTTCAGAGAAGACCGGGCT
LOC_Os07g26870
Os.28495.1.S1_at--515--1771Chr07:15560124..15560148 (25 bp)
ACCGGGCTCGTCACTGTTATGAAGA
LOC_Os07g26870
Os.28495.1.S1_at--135--8791Chr07:15560138..15560162 (25 bp)
TGTTATGAAGACACCGCTGCGGGCT
LOC_Os07g26870
Os.28495.1.S1_at--880--6551Chr07:15560174..15560198 (25 bp)
GATTACTTCGTCTTAGGTAGCACCT
LOC_Os07g26870
Os.28495.1.S1_at--296--10451Chr07:15560186..15560210 (25 bp)
TTAGGTAGCACCTGCACTGCATGCC
LOC_Os07g26870
Os.28495.1.S1_at--459--1971Chr07:15560201..15560225 (25 bp)
ACTGCATGCCGCAGGCTTACTAGCG
LOC_Os07g26870
Os.28495.1.S1_at--34--8311Chr07:15560214..15560238 (25 bp)
GGCTTACTAGCGGACACTGATTTTA
LOC_Os07g26870
Target Sequence 
TACCTGCTGGCGCACACGGTGGACCGCGACGTCCCGCTCGGCGCCGGTGGCTACGTGNTCCCNAAGGGAGCCATTGTCAA
CTACGCGGTNGCGGAGATCGGCCGTGACGCAACGGCGTGGACGGACCCGGACGAGTTCNTGCCGGAGCGGTTCATGGAAG
GCGGGGAGGGCGCCATGGTGGACGCCGTCTCCTGCGGTGGCGCGGAGATCAGGATGATGCCGTTCGGGGCAGGCCGGAGG
GCGTGCCCCGGCGCAAGCTTCGCCGTCTCTGTCCTGCACTTGTTCGTCGGCAGGTTGGTCGAACAGTTCGAGTGGTGGCC
GGTGGCCGAGGACGAGAAGGCCGCCGCCGTCGACTTTTCAGAGAAGACCGGGCTCGTCACTGTTATGAAGACACCGCTGC
GGGCTCTCCTTGTCCCGATTACTTCGTCTTAGGTAGCACCTGCACTGCATGCCGCAGGCTTACTAGCGGACACTGATTTT
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.28495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis