Browse Element(s) Details


Os.30148.1.S1_at

Description gb:AK109200.1
DB_XREF= gi:32994409
TID=Os.30148.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0665A11.19 (P0665A11.19), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-156-C01, full insert sequence.
FL= gb:AK109200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5643011/11Ctr copper transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56380Os.35778.1.S1_at11/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56380Os.47886.1.S1_at1/111+32827863..32829805Tyrosine/DOPA decarboxylase 2, putative, expressed
LOC_Os01g56390Os.13915.1.S1_at11/111+32835247..32838750F-box domain containing protein, expressed
LOC_Os01g56400Os.2175.1.S1_a_at11/111+32840542..32843876ABC transporter family protein, expressed
LOC_Os01g56410OsAffx.25367.1.S1_at1/111+32844555..32848855retrotransposon, putative, centromere-specific
LOC_Os01g56420Os.42024.1.S1_at11/111+32850176..32851015Ctr copper transporter family protein, expressed
LOC_Os01g56430Os.30148.1.S1_at11/111+32853138..32853771Ctr copper transporter family protein, expressed
LOC_Os01g56440OsAffx.11622.1.S1_at7/111+32854639..32854869NA
LOC_Os01g56450Os.26282.1.S1_at11/111+32861705..32862760expressed protein
LOC_Os01g56460Os.23696.1.S1_at10/111+32865755..32868465Mitochondrial glycoprotein, expressed
LOC_Os01g56470Os.32071.1.S1_at11/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56470Os.32071.2.S1_x_at10/111+32870152..32872039Mal d 1-associated protein, putative, expressed
LOC_Os01g56480Os.51237.1.S1_at11/111+32873958..32874554expressed protein
LOC_Os01g56480Os.51237.1.S1_x_at11/111+32873958..32874554expressed protein
LOC_Os01g56480OsAffx.9410.1.S1_x_at4/111+32873958..32874554expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006825biological_processcopper ion transport
GO:0015678biological_processhigh affinity copper ion transport
GO:0048234biological_processmale gamete generation (sensu Magnoliophyta)
GO:0048364biological_processroot development
GO:0016020cellular_componentmembrane
GO:0005375molecular_functioncopper ion transporter activity
GO:0015089molecular_functionhigh affinity copper ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30148.1.S1_at--443--2111Chr01:32853184..32853208 (25 bp)
ACATGGGAAGGCACGGCATGGCCAT
LOC_Os01g56430
Os.30148.1.S1_at--921--9871Chr01:32853255..32853279 (25 bp)
TACATGCACATGACGTTTTACTGGG
LOC_Os01g56430
Os.30148.1.S1_at--336--7891Chr01:32853553..32853577 (25 bp)
GGTTCTTGGCGTTCAGGGCGGGCCT
LOC_Os01g56430
Os.30148.1.S1_at--128--5331Chr01:32853596..32853620 (25 bp)
GAAGGGAGAGCTCGCGCCTGCGGCG
LOC_Os01g56430
Os.30148.1.S1_at--451--9111Chr01:32853621..32853645 (25 bp)
TGCTGCTAGATGTGGTTGCCATGGC
LOC_Os01g56430
Os.30148.1.S1_at--1092--9191Chr01:32853637..32853661 (25 bp)
TGCCATGGCGCAAGACAAAAGCGAA
LOC_Os01g56430
Os.30148.1.S1_at--431--2911Chr01:32853687..32853711 (25 bp)
AAGGATTTTGAGTGCGGATCTGCTC
LOC_Os01g56430
Os.30148.1.S1_at--640--1131Chr01:32853697..32853721 (25 bp)
AGTGCGGATCTGCTCTTGAATCTAC
LOC_Os01g56430
Os.30148.1.S1_at--271--7971Chr01:32853702..32853726 (25 bp)
GGATCTGCTCTTGAATCTACGCTAA
LOC_Os01g56430
Os.30148.1.S1_at--1113--5231Chr01:32853714..32853738 (25 bp)
GAATCTACGCTAAAATCTATATTTG
LOC_Os01g56430
Os.30148.1.S1_at--519--3691Chr01:32853730..32853754 (25 bp)
CTATATTTGTTATCCTCACAATGGA
LOC_Os01g56430
Target Sequence 
ACATGGGAAGGCACGGCATGGCCATGGCCATGGCGCCTGCGGCGGCTGGCGGCGCGGGCAGGAGGAAGCGGTACATGCAC
ATGACGTTTTACTGGGGCAAGAACTCGGAGATCCTCTTCACCGGGTGGCCGGGCGCCAGCGGCGGCATGTACGCGCTGGC
GCTCGCCGCCGTCTTCGCTCTGGCCGTGCTCCTCGAGTTCCTCGGCTCCCCCCGCGTGCAGGAGTCCTCCTCCCTCGGCA
GCAGGCGGCGGCGCGCGACGGCGGCGGCGGTGCACGCGGTGCGCGTCGGGCTGGCGTACCTGCTCATGCTCGCGCTCATG
TCGTTCAACGTCGGCGTGCTCCTCGCGGCCGTCGCCGGGCACGCGGCGGGGTTCTTGGCGTTCAGGGCGGGCCTGTGCGG
CGGCGGGTACAAGAAGGGAGAGCTCGCGCCTGCGGCGTGCTGCTAGATGTGGTTGCCATGGCGCAAGACAAAAGCGAATA
TATTTGTTTTCGAAAATTTAGATAAGGATTTTGAGTGCGGATCTGCTCTTGAATCTACGCTAAAATCTATATTTGTTATC
CTCACAATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30148.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis