Browse Element(s) Details


Os.30239.1.S1_at

Description gb:AK109088.1
DB_XREF= gi:32994297
TID=Os.30239.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) alcohol dehydrogenase-like protein (P0453E03.43), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-154-H12, full insert sequence.
FL= gb:AK109088.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4691011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g46870OsAffx.31756.5.S1_x_at11/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.53426.1.S1_at4/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.28282.2.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870Os.7935.2.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46870OsAffx.31756.3.S1_x_at1/117+28017428..28020000oxidoreductase, short chain dehydrogenase/reductase family protein
LOC_Os07g46880NANA7+28023724..28029879transposon protein, putative, unclassified
LOC_Os07g46890NANA7+28030524..28033752retrotransposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_x_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.3.S1_at11/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_x_at10/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.1.S1_at5/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46900OsAffx.31756.5.S1_x_at1/117+28036333..28042118transposon protein, putative, unclassified
LOC_Os07g46910Os.30239.1.S1_at11/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.16866.2.A1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46910Os.28438.4.S1_x_at1/117+28043187..28044605oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_x_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.15281.1.S1_at11/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46920Os.44598.1.S1_x_at1/117+28049381..28051737oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46930Os.44598.1.S1_x_at11/117+28052133..28054681oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os07g46940Os.16866.2.A1_x_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46940OsAffx.22529.1.S1_s_at1/117+28056141..28057175NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g46950Os.32357.1.S1_x_at11/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.32357.1.S1_at8/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46950Os.10002.1.S1_at7/117+28059684..28061571transposon protein, putative, unclassified, expressed
LOC_Os07g46960NANA7+28064437..28065364hypothetical protein
LOC_Os07g46970NANA7+28067733..28069627NAD dependent epimerase/dehydratase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.30239.1.S1_at--845--811Chr07:28044096..28044120 (25 bp)
ATGGTGCAGGTCCTTGAGGCCTACC
LOC_Os07g46910
Os.30239.1.S1_at--332--4131Chr07:28044115..28044139 (25 bp)
CCTACCCCGGGATGAGCTTCGAGGA
LOC_Os07g46910
Os.30239.1.S1_at--848--5031Chr07:28044170..28044194 (25 bp)
GCAGATGGAAGCTGGCCCGTTGATC
LOC_Os07g46910
Os.30239.1.S1_at--336--8451Chr07:28044182..28044206 (25 bp)
TGGCCCGTTGATCGACCCCGAGGAC
LOC_Os07g46910
Os.30239.1.S1_at--290--8191Chr07:28044295..28044319 (25 bp)
GGAAGCTGCTCAAAATCCCCAAGGA
LOC_Os07g46910
Os.30239.1.S1_at--865--5651Chr07:28044323..28044347 (25 bp)
GACAGTGATCAAGAGCAGTGCAACA
LOC_Os07g46910
Os.30239.1.S1_at--1039--2771Chr07:28044397..28044421 (25 bp)
AAGAGAGTCTACTTTGTACCGTGAA
LOC_Os07g46910
Os.30239.1.S1_at--273--6991Chr07:28044412..28044436 (25 bp)
GTACCGTGAAATATAGACTCCCCAA
LOC_Os07g46910
Os.30239.1.S1_at--318--10392Chr07:28044443..28044467 (25 bp)
TTTTCGCTCCCAAATAAGGCTGTGT
LOC_Os07g46910
Os.30239.1.S1_at--1125--8331Chr07:28044460..28044484 (25 bp)
GGCTGTGTTCTATTGGAACTTCGCA
LOC_Os07g46910
Os.30239.1.S1_at--212--5391Chr07:28044578..28044602 (25 bp)
GAAGCATGTCTGTGTAAATGAGCGA
LOC_Os07g46910
Target Sequence 
ATGGTGCAGGTCCTTGAGGCCTACCCCGGGATGAGCTTCGAGGAGCTCAAGAACGCCATGGCGGCGTCCATGGAGCAGAT
GGAAGCTGGCCCGTTGATCGACCCCGAGGACGTGGCGAGGGCGGCCGTCTTCCTGGCGTCCGACGAGGCCAGGTACATCA
ACGGCCATAACCTCGTCGTCGACGGCGGCTTCACGGTGGGGAAGCTGCTCAAAATCCCCAAGGAGTAGACAGTGATCAAG
AGCAGTGCAACAAGACAAGAAAAATTGCAGGATGCAAAAAAAAAAAAAAAGAACGAATAAGGAAGAGAGTCTACTTTGTA
CCGTGAAATATAGACTCCCCAAATTTACTTTTCGCTCCCAAATAAGGCTGTGTTCTATTGGAACTTCGCAAGTAAAACGA
AGCGACGAATTAACGTATGATTAATTAAGTATTAGCTTAAAAGATTTTTTTCTTTAAAAAAAATGTACCATTTAATAGTT
TGAGAAGCATGTCTGTGTAAATGAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.30239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis