Browse Element(s) Details

Os.30886.3.S1_x_at

Description

gb:AK063239.1
DB_XREF= gi:32973257
TID=Os.30886.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.30886 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative farnesylated protein (ATFP6) (OSJNBb0027B08.32), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-112-G02, full insert sequence.
FL= gb:AK063239.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g61360	6/11	hydrolase, alpha/beta fold family protein, expressed
LOC_Os05g42250	3/11	cation channel family protein, expressed
LOC_Os03g61340	1/11	hydrolase, alpha/beta fold family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g61280	Os.7260.1.S1_x_at	11/11	3	+	34736491..34739744	beta-mannan endohydrolase, putative, expressed
LOC_Os03g61280	Os.38099.2.S1_x_at	4/11	3	+	34736491..34739744	beta-mannan endohydrolase, putative, expressed
LOC_Os03g61290	OsAffx.22646.1.S1_at	11/11	3	+	34741856..34746534	cation/hydrogen exchanger, putative
LOC_Os03g61290	OsAffx.4492.1.S1_x_at	1/11	3	+	34741856..34746534	cation/hydrogen exchanger, putative
LOC_Os03g61310	Os.19976.1.S1_at	10/11	3	+	34749011..34752174	D-mannose binding lectin family protein, expressed
LOC_Os03g61319	OsAffx.25789.1.S1_at	11/11	3	+	34753071..34754021	No apical meristem protein
LOC_Os03g61330	Os.30021.1.S1_at	10/11	3	+	34756059..34759297	Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61330	Os.30021.2.S1_at	9/11	3	+	34756059..34759297	Fumarylacetoacetate hydrolase domain containing protein 1, putative, expressed
LOC_Os03g61340	Os.25535.1.S1_at	11/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.3.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.2.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61340	Os.30886.1.S1_x_at	1/11	3	+	34759621..34762463	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.1.S1_x_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.1.S1_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.2.S1_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.2.S1_x_at	11/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61360	Os.30886.3.S1_x_at	6/11	3	+	34764436..34767878	hydrolase, alpha/beta fold family protein, expressed
LOC_Os03g61370	OsAffx.31869.1.S1_at	10/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.5.S1_x_at	4/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.4.S1_at	2/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.2.S1_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.3.S1_s_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61370	OsAffx.31869.4.S1_x_at	1/11	3	+	34770196..34771311	retrotransposon protein, putative, unclassified
LOC_Os03g61380	OsAffx.22711.4.S1_at	11/11	3	+	34775361..34776347	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.22711.3.S1_x_at	11/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.22711.3.S1_at	11/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.22711.1.S1_x_at	2/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.20380.1.S1_at	1/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.20380.2.S1_x_at	1/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.20380.1.S1_x_at	1/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61390	OsAffx.8420.1.S1_at	1/11	3	+	34779831..34782133	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.21171.2.S1_at	11/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.21171.4.S1_x_at	5/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.21171.3.S1_x_at	3/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.22692.1.A1_x_at	1/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.20729.1.S1_x_at	1/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61400	OsAffx.21171.5.S1_x_at	1/11	3	+	34782778..34788534	retrotransposon protein, putative, unclassified
LOC_Os03g61410	Os.25292.1.S1_a_at	11/11	3	+	34790477..34791484	expressed protein
LOC_Os03g61419	NA	NA	3	+	34792167..34793228	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006952	biological_process	defense response
GO:0009626	biological_process	hypersensitive response
GO:0016020	cellular_component	membrane
GO:0004301	molecular_function	epoxide hydrolase activity
GO:0005216	molecular_function	ion channel activity
GO:0005221	molecular_function	intracellular cyclic nucleotide activated cation channel activity
GO:0005222	molecular_function	intracellular cAMP activated cation channel activity
GO:0005242	molecular_function	inward rectifier potassium channel activity
GO:0005261	molecular_function	cation channel activity
GO:0005516	molecular_function	calmodulin binding
GO:0008324	molecular_function	cation transporter activity
GO:0030551	molecular_function	cyclic nucleotide binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.30886.3.S1_x_at--793--617	1	Chr03:34764932..34764956 (25 bp)	GAGGAGGACATCGACTACTTCGCCG	LOC_Os03g61360
Os.30886.3.S1_x_at--809--253	1	Chr03:34764872..34764896 (25 bp)	AACTACTACCGCAACATGGACAGGA	LOC_Os03g61360
Os.30886.3.S1_x_at--497--903	1	Chr03:34764811..34764835 (25 bp)	TGCAGGTGCCGACCAAGTTCATCGT	LOC_Os03g61360
Os.30886.3.S1_x_at--906--745	1	Chr03:34764784..34764808 (25 bp)	GGGACGGCGACCTGACGTACCACTA	LOC_Os03g61360
Os.30886.3.S1_x_at--806--95	1	Chr03:34764748..34764772 (25 bp)	AGGACTACCTGCACAAGGGCGGGCT	LOC_Os03g61360
Os.30886.3.S1_x_at--584--391	2	Chr03:34764675..34764699 (25 bp)	CGGCCACTTCATCCAGCAGGAGAGG	LOC_Os03g61360
Os.30886.3.S1_x_at--1072--963	1	NONE	TCAGCGACCTTATCTACAACTTCCT	NONE
Os.30886.3.S1_x_at--442--579	1	Chr05:24633253..24633277 (25 bp)	GACGACTTCTAAATGACTCCTGTTG	LOC_Os05g42250
Os.30886.3.S1_x_at--737--881	1	Chr05:24633273..24633297 (25 bp)	TGTTGCATCAGATCAGCTGCCTGTA	LOC_Os05g42250
Os.30886.3.S1_x_at--669--159	1	Chr05:24633287..24633311 (25 bp)	AGCTGCCTGTACACGGATTCAAGAA	LOC_Os05g42250
Os.30886.3.S1_x_at--846--691	1	Chr05:24633418..24633442 (25 bp)	GTATGAGTTCTATTTGAATCCGTGA	NONE

Target Sequence

GAGGAGGACATCGACTACTTCGCCGCCGCGTTCGAGAGGACGGGCTTCACCGGCGGCATCAACTACTACCGCAACATGGA
CAGGAACTGGGAGATGGCGGCGCCATGGGCGGACGCCAAGGTGCAGGTGCCGACCAAGTTCATCGTCGGGGACGGCGACC
TGACGTACCACTACGCCGGCATCCAGGACTACCTGCACAAGGGCGGGCTCAAGGCCGAGGTGCCGCTGCTCGAGGACGTC
GTCGTCATCCCCGGCGCCGGCCACTTCATCCAGCAGGAGAGGGCTGAGGAGGTCAGCGACCTTATCTACAACTTCCTCAC
CTCCCCCAAGCCCAACCAGGACGACGACTTCTAAATGACTCCTGTTGCATCAGATCAGCTGCCTGTACACGGATTCAAGA
ATGGGGAAGCGTTGGGATCTTGTATTTAGGGGTGAAAACGGGCGGGTATTTTCCGCACCCGCCTGACCCGACGGTTGCGG
GAATGATACGATAGTGGAAAATATATTGTATGAGTTCTATTTGAATCCGTGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis