Browse Element(s) Details


Os.32123.1.S1_at

Description gb:AK105948.1
DB_XREF= gi:32991157
TID=Os.32123.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.32123 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0494A10.27 (P0494A10.27), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-C08, full insert sequence.
FL= gb:AK105948.1 gb:AK071050.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0293011/11glycosyltransferase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02890Os.52233.1.S1_at11/111+1044778..1052216Phosphatidyl serine synthase family protein
LOC_Os01g02900Os.1054.1.A1_at11/111+1053985..1056532HGA6, putative, expressed
LOC_Os01g02910OsAffx.10885.2.S1_x_at11/111+1063480..1066628glycosyltransferase, putative, expressed
LOC_Os01g02920Os.34721.1.S1_at11/111+1068764..1071631glycosyltransferase, putative, expressed
LOC_Os01g02930Os.32123.1.S1_at11/111+1075367..1078474glycosyltransferase, putative, expressed
LOC_Os01g02940Os.11246.1.S1_at11/111+1086644..1090326glycosyltransferase, putative, expressed
LOC_Os01g02950OsAffx.23093.1.S1_at11/111+1094382..1095744hypothetical protein
LOC_Os01g02960Os.32335.1.S1_at11/111+1100584..1103692expressed protein
LOC_Os01g02960OsAffx.23093.2.S1_at1/111+1100584..1103692expressed protein
LOC_Os01g02960Os.32335.2.S1_x_at1/111+1100584..1103692expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32123.1.S1_at--747--9271Chr01:1075772..1075796 (25 bp)
TCCGGTACATGGAGTACAGCGTCGC
LOC_Os01g02930
Os.32123.1.S1_at--211--9451Chr01:1075640..1075664 (25 bp)
TCGGCAAGCAGGACGTCCGCATCAA
LOC_Os01g02930
Os.32123.1.S1_at--473--1731Chr01:1075574..1075598 (25 bp)
ACCTTCGACCATCACATAGCTAGTG
LOC_Os01g02930
Os.32123.1.S1_at--615--6111Chr01:1075538..1075562 (25 bp)
GAGTGACACAGATGTTACAGTTGCT
LOC_Os01g02930
Os.32123.1.S1_at--1043--4731Chr01:1075516..1075540 (25 bp)
GCTGATAGATATGATACACCACCTC
LOC_Os01g02930
Os.32123.1.S1_at--1022--331Chr01:1075503..1075527 (25 bp)
ATACACCACCTCATTGGTCGCAATT
LOC_Os01g02930
Os.32123.1.S1_at--818--7791Chr01:1075488..1075512 (25 bp)
GGTCGCAATTTGGTACAGAATGTTC
LOC_Os01g02930
Os.32123.1.S1_at--1091--5271Chr01:1075471..1075495 (25 bp)
GAATGTTCAACCCATCCTTTTTTGT
LOC_Os01g02930
Os.32123.1.S1_at--353--10871Chr01:1075439..1075463 (25 bp)
TTGGCTCAGTATATCCATCATCATT
LOC_Os01g02930
Os.32123.1.S1_at--482--8071Chr01:1075411..1075435 (25 bp)
GGAGCGTATGAACATGCACATTGAT
LOC_Os01g02930
Os.32123.1.S1_at--746--1171Chr01:1075370..1075394 (25 bp)
AGTACATGTATGTCACCGAATTCAT
LOC_Os01g02930
Target Sequence 
TCCGGTACATGGAGTACAGCGTCGCCGCCGACGAGAGCACGCTGCTGGAGATGCTGGGGCCGGAGCACCAGGTGGTGAAG
GACCCGGAGGCGGTTCACCGGAGCGGCTGGGACAAGGTCGCCGAGTACTACCTCGGCAAGCAGGACGTCCGCATCAACGT
CGCCCGCTTCGCCGCCACGCTCGCCGCCGCCTTCGATCACCTTCGACCATCACATAGCTAGTGAGTGAGTGAGTGAGTGA
CACAGATGTTACAGTTGCTGATAGATATGATACACCACCTCATTGGTCGCAATTTGGTACAGAATGTTCAACCCATCCTT
TTTTGTTTTTGTTTTGGCTCAGTATATCCATCATCATTGGTGGAGCGTATGAACATGCACATTGATTGTATTGATTTGGT
AGAGTACATGTATGTCACCGAATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32123.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis