Browse Element(s) Details


Os.32232.1.S1_at

Description gb:AK105529.1
DB_XREF= gi:32990738
TID=Os.32232.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.32232 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0679C12.25 (P0679C12.25), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-G08, full insert sequence.
FL= gb:AK105529.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6425611/11transposon protein, putative, Mutator sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g64200OsAffx.24056.2.S1_at11/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64200OsAffx.24056.1.S1_x_at6/111+37608020..37612178transposon protein, putative, unclassified
LOC_Os01g64210OsAffx.23911.1.S1_at11/111+37615221..37615706hypothetical protein
LOC_Os01g64220OsAffx.21722.2.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.21722.1.S1_x_at10/111+37616338..37625220expressed protein
LOC_Os01g64220OsAffx.26706.1.S1_x_at1/111+37616338..37625220expressed protein
LOC_Os01g64230OsAffx.24964.1.S1_s_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.1.S1_x_at11/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_s_at5/111+37626562..37627388hypothetical protein
LOC_Os01g64230OsAffx.24964.2.S1_x_at3/111+37626562..37627388hypothetical protein
LOC_Os01g64240OsAffx.1021.2.S1_at11/111+37628468..37628879hypothetical protein
LOC_Os01g64250OsAffx.23912.1.S1_at11/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64250Os.5476.1.S1_at1/111+37630366..37634545Hemerythrin family protein, expressed
LOC_Os01g64256Os.32232.1.S1_at11/111+37635114..37637161transposon protein, putative, Mutator sub-class, expressed
LOC_Os01g64262Os.26850.1.A1_s_at11/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64262Os.45986.1.A1_at5/111+37637691..37641536hydrolase, alpha/beta fold family protein, putative, expressed
LOC_Os01g64270Os.26570.1.S1_s_at11/111+37642140..37643107expressed protein
LOC_Os01g64270Os.37904.1.S1_at11/111+37642140..37643107expressed protein
LOC_Os01g64280Os.42377.1.S1_x_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64280Os.20739.1.S1_s_at11/111+37643069..37647366sorting nexin 1, putative, expressed
LOC_Os01g64290Os.30881.3.S1_x_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.3.S1_at11/111+37648744..37650351expressed protein
LOC_Os01g64290Os.30881.1.S1_at10/111+37648744..37650351expressed protein
LOC_Os01g64300Os.5693.1.S1_at11/111+37650747..37651723expressed protein
LOC_Os01g64310Os.34471.1.S1_at11/111+37661246..37663058NAC-domain containing protein 90, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32232.1.S1_at--447--6151Chr01:37635671..37635695 (25 bp)
GAGGTGCCAAGATTCGTATACCAAC
LOC_Os01g64256
Os.32232.1.S1_at--1108--2731Chr01:37635634..37635658 (25 bp)
AAGAAGCACCTCACTGACATTGCCG
LOC_Os01g64256
Os.32232.1.S1_at--881--2511Chr01:37635604..37635628 (25 bp)
AACTTCCTCATGTGCCGGGCAATCG
LOC_Os01g64256
Os.32232.1.S1_at--1022--9371Chr01:37635438..37635462 (25 bp)
TCGGGCCATCCATCGGATTGTTTGA
LOC_Os01g64256
Os.32232.1.S1_at--80--9451Chr01:37635426..37635450 (25 bp)
TCGGATTGTTTGACTCCATCAGAGA
LOC_Os01g64256
Os.32232.1.S1_at--609--8551Chr01:37635393..37635417 (25 bp)
TGGAGTTCGCGTGCATGTACCCTTG
LOC_Os01g64256
Os.32232.1.S1_at--78--1771Chr01:37635268..37635292 (25 bp)
ACCTGAAAGATCGTCGAACCGTGGT
LOC_Os01g64256
Os.32232.1.S1_at--721--2591Chr01:37635252..37635276 (25 bp)
AACCGTGGTACGAGGCTATGACTTA
LOC_Os01g64256
Os.32232.1.S1_at--338--10131Chr01:37635222..37635246 (25 bp)
TATGACCATTTTCGCCTTTTTGGGT
LOC_Os01g64256
Os.32232.1.S1_at--1136--9431Chr01:37635187..37635211 (25 bp)
TCGGCATGTTGTCCCATGTAGTAAT
LOC_Os01g64256
Os.32232.1.S1_at--741--7771Chr01:37635146..37635170 (25 bp)
GGTGCAATATGTAGTGTCCTGAAAT
LOC_Os01g64256
Target Sequence 
GAGGTGCCAAGATTCGTATACCAACGCCAAGAACAACAAGAAGCACCTCACTGACATTGCCGACCTCAACTTCCTCATGT
GCCGGGCAATCGAGAACCCGCAGCTGACGACGGGCTCTGCGCTCCGGACGGCGGTCGTCTCCGTGTTCGAGGAGCCGGTG
GTGTACGACCTCTCCGATCTGCAGAGCAAGGCCGGCGTGGAGGAATTCGTGTGCTGCGCCACCGTGCATGGCGTCGGGCC
ATCCATCGGATTGTTTGACTCCATCAGAGATGGTCAGCTGGAGTTCGCGTGCATGTACCCTTGCCCTCTCCATTCCAGAA
AGCAGATGCAGNAGATCTTGAACAAGGTGAAGCAGATCTTACACGAAGGGAGCATCGGAGATGATGAAAGCTTTGAAGAT
TGTACCTGAAAGATCGTCGAACCGTGGTACGAGGCTATGACTTATGATTTATGACCATTTTCGCCTTTTTGGGTAAATAA
ACTATCGGCATGTTGTCCCATGTAGTAATTGATGTTGCACGTTTTGGTGCAATATGTAGTGTCCTGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32232.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis