Browse Element(s) Details


Os.3228.1.S1_a_at

Description gb:AK069658.1
DB_XREF= gi:32979682
TID=Os.3228.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.3228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023030D22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023030D22, full insert sequence.
FL= gb:AK069658.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5009011/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g50020Os.54774.1.S1_x_at1/113+28494424..28495071retrotransposon, putative, centromere-specific
LOC_Os03g50030Os.3160.1.S1_at11/113+28497524..28499113Phospholipase A2, putative, expressed
LOC_Os03g50040Os.27499.2.S1_a_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_s_at11/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50040Os.23310.1.A1_x_at2/113+28501125..28504572phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os03g50050OsAffx.13431.1.S1_at11/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50050OsAffx.28800.1.S1_x_at4/113+28506013..28507518F-box domain containing protein, expressed
LOC_Os03g50070Os.3167.1.S1_at11/113+28510130..28514165expressed protein
LOC_Os03g50080OsAffx.3560.1.S1_at11/113+28514772..28516004immunophilin, putative, expressed
LOC_Os03g50090Os.3228.1.S1_a_at11/113+28516384..28520481transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os03g50100OsAffx.13432.1.S1_at11/113+28522812..28526290expressed protein
LOC_Os03g50110Os.50527.1.S1_a_at11/113+28534436..28535884expressed protein
LOC_Os03g50120Os.27979.1.S1_at11/113+28537788..28542823Zn-finger in Ran binding protein and others containing protein, expressed
LOC_Os03g50130Os.8549.1.S1_at11/113+28543533..28545513MAPEG family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3228.1.S1_a_at--18--8371Chr03:28518479..28518503 (25 bp)
GGCGTGGTATTGATATTCCCGATGT
LOC_Os03g50090
Os.3228.1.S1_a_at--350--6031Chr03:28518435..28518459 (25 bp)
GAGATGCCTAGTTCAATCGATACAT
LOC_Os03g50090
Os.3228.1.S1_a_at--30--8211Chr03:28518364..28518388 (25 bp)
GGCAACTTCGTTTTTAACTCTGGAG
LOC_Os03g50090
Os.3228.1.S1_a_at--624--9811Chr03:28518350..28518374 (25 bp)
TAACTCTGGAGAACACTGACATTTT
LOC_Os03g50090
Os.3228.1.S1_a_at--173--1371Chr03:28518299..28518323 (25 bp)
AGAGCAACAGTCCTGTGCCACCTGA
LOC_Os03g50090
Os.3228.1.S1_a_at--97--4411Chr03:28518283..28518307 (25 bp)
GCCACCTGAACTTGCAAGGCATGAA
LOC_Os03g50090
Os.3228.1.S1_a_at--3--4991Chr03:28518258..28518282 (25 bp)
GCATCCAAATTTAAGCCAGGCTCAG
LOC_Os03g50090
Os.3228.1.S1_a_at--763--8311Chr03:28518240..28518264 (25 bp)
GGCTCAGTTCCTGATAGACCTCCAA
LOC_Os03g50090
Os.3228.1.S1_a_at--1052--2991Chr03:28518210..28518234 (25 bp)
AATGACACAGTCTATGCAACTCACT
LOC_Os03g50090
Os.3228.1.S1_a_at--1119--2531Chr03:28518193..28518217 (25 bp)
AACTCACTGAAGCATCTACTGCAGA
LOC_Os03g50090
Os.3228.1.S1_a_at--728--7551Chr03:28518166..28518190 (25 bp)
GGGCCAAAGATCCTCCAGTATTACA
LOC_Os03g50090
Target Sequence 
GGCGTGGTATTGATATTCCCGATGTTGCNCATGTCATCAACTATGAGATGCCTAGTTCAATCGATACATACACACATCGT
ATTGGAAGAACTGGACGTGCAGGAAAGAAGGGATTGGCAACTTCGTTTTTAACTCTGGAGAACACTGACATTTTCTTTGA
TCTGAAACAGATGCTTATACAGAGCAACAGTCCTGTGCCACCTGAACTTGCAAGGCATGAAGCATCCAAATTTAAGCCAG
GCTCAGTTCCTGATAGACCTCCAAGACGAAATGACACAGTCTATGCAACTCACTGAAGCATCTACTGCAGAATGGGCCAA
AGATCCTCCAGTATTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3228.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis