Browse Element(s) Details


Os.32551.2.S1_at

Description gb:AK119357.1
DB_XREF= gi:37988980
TID=Os.32551.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32551 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) reverse transcriptase -like protein (P0458E05.36), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-131-G01, full insert sequence.
FL= gb:AK119357.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7365611/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73620Os.15240.1.A1_x_at11/111+42972937..42980919expressed protein
LOC_Os01g73620Os.12693.4.S1_at11/111+42972937..42980919expressed protein
LOC_Os01g73630Os.30910.1.S1_at9/111+42981345..42982564rac GTPase activating protein 1, putative, expressed
LOC_Os01g73640Os.48276.1.S1_at11/111+42986653..42989419expressed protein
LOC_Os01g73640Os.8747.1.S2_x_at1/111+42986653..42989419expressed protein
LOC_Os01g73644Os.7590.1.S1_at10/111+42990380..42993061expressed protein
LOC_Os01g73650OsAffx.24032.1.S1_at11/111+42995161..42998440expressed protein
LOC_Os01g73656Os.32551.2.S1_at11/111+42999869..43004927expressed protein
LOC_Os01g73662Os.32551.1.S1_at11/111+43006089..43007394expressed protein
LOC_Os01g73670Os.8761.3.S1_x_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.2.S1_at11/111+43011790..43016248expressed protein
LOC_Os01g73670Os.8761.1.S1_s_at10/111+43011790..43016248expressed protein
LOC_Os01g73680Os.27288.2.S1_x_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.2.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680Os.27288.1.S1_at11/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.1.S1_x_at9/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73680OsAffx.13151.2.S1_at1/111+43016763..43022294Aspartyl aminopeptidase, putative, expressed
LOC_Os01g73690Os.42980.1.S1_at11/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73690Os.26995.1.S1_at1/111+43022310..43025907pentatricopeptide, putative, expressed
LOC_Os01g73700Os.42977.2.S1_x_at2/111+43027029..43028099transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32551.2.S1_at--703--4371Chr01:43004234..43004258 (25 bp)
CCAACATTCAGGTCGATAGAGTCAT
LOC_Os01g73656
Os.32551.2.S1_at--504--411Chr01:43004257..43004281 (25 bp)
ATCATGGAGAGAAACCCCGGCCTTT
LOC_Os01g73656
Os.32551.2.S1_at--227--3931Chr01:43004274..43004298 (25 bp)
CGGCCTTTGCTGTCGACTATAATAT
LOC_Os01g73656
Os.32551.2.S1_at--1148--8931Chr01:43004308..43004332 (25 bp)
TGACTGGGAGGACTTCAGCAGACAT
LOC_Os01g73656
Os.32551.2.S1_at--215--5051Chr01:43004325..43004349 (25 bp)
GCAGACATGATAATCCACACTGAAG
LOC_Os01g73656
Os.32551.2.S1_at--1039--3291Chr01:43004340..43004679 (25 bp)
CACACTGAAGATATAACCCTGGGAG
LOC_Os01g73656
Os.32551.2.S1_at--242--10171Chr01:43004666..43004690 (25 bp)
TATAACCCTGGGAGCTGTGCGAGAG
LOC_Os01g73656
Os.32551.2.S1_at--27--3471Chr01:43004720..43004744 (25 bp)
CAGTGGCTTTTGGTTCCTACTTGTC
LOC_Os01g73656
Os.32551.2.S1_at--347--7911Chr01:43004731..43004755 (25 bp)
GGTTCCTACTTGTCTTTGATAGAGC
LOC_Os01g73656
Os.32551.2.S1_at--1098--7631Chr01:43004814..43004838 (25 bp)
GGGAGATGCACCACTAAAGATCTTA
LOC_Os01g73656
Os.32551.2.S1_at--1046--273Chr07:12683797..12683831 (25 bp)
ATAGTACAATGTCCGTGCGTTGCAA
NONE
Target Sequence 
CCAACATTCAGGTCGATAGAGTCATCATGGAGAGAAACCCCGGCCTTTGCTGTCGACTATAATATATGTTAACATGACTG
GGAGGACTTCAGCAGACATGATAATCCACACTGAAGATATAACCCTGGGAGCTGTGCGAGAGGTAGGCATGAAGTCTGGA
ACAATGGGAAACAGTGGCTTTTGGTTCCTACTTGTCTTTGATAGAGCTAGCAGGAGGCGAAGAGAAACATAGTTAAGTTA
TTGATAATTTAGTATTTGCAAAAGAGGGAGATGCACCACTAAAGATCTTATAAAGATTGGTACTGTTATATTTGGTGCTT
TCAATATTTTCTTGGTAATCTATAGTACAATGTCCGTGCGTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32551.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis