Browse Element(s) Details


Os.32602.1.S1_at

Description gb:AK119662.1
DB_XREF= gi:37989285
TID=Os.32602.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32602 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0459B04.11 (P0459B04.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-141-B03, full insert sequence.
FL= gb:AK119662.1 gb:AK103552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g7437010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g74310OsAffx.24039.2.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310OsAffx.24039.1.S1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.42948.1.S1_x_at11/111+43376010..43385697expressed protein
LOC_Os01g74310Os.26657.1.A1_s_at11/111+43376010..43385697expressed protein
LOC_Os01g74320Os.32105.1.S1_at11/111+43390588..43392280ankyrin repeat family protein, putative, expressed
LOC_Os01g74330Os.27785.1.A1_at11/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_x_at10/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74330Os.39098.1.S1_at9/111+43393540..43397014pectinacetylesterase family protein, putative, expressed
LOC_Os01g74340OsAffx.24040.1.S1_s_at11/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74340Os.21875.1.S1_at3/111+43397835..43399098RNA recognition motif family protein
LOC_Os01g74350OsAffx.11847.1.S1_at11/111+43399629..43401621Soluble inorganic pyrophosphatase, putative, expressed
LOC_Os01g74360Os.45884.1.S1_x_at3/111+43404201..4340450226S proteasome non-ATPase regulatory subunit 6, putative, expressed
LOC_Os01g74370Os.32602.1.S1_at10/111+43405650..43407248expressed protein
LOC_Os01g74370Os.32602.2.S1_x_at10/111+43405650..43407248expressed protein
LOC_Os01g74380OsAffx.22940.1.S1_s_at9/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.3.S1_x_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_at5/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.2.S1_s_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.22940.5.S1_x_at3/111+43408845..43409881hypothetical protein
LOC_Os01g74380OsAffx.31552.2.S1_at1/111+43408845..43409881hypothetical protein
LOC_Os01g74390Os.35344.18.S1_x_at5/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390Os.35344.3.S1_x_at3/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74390OsAffx.22940.5.S1_x_at1/111+43413021..43416776retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g74400NANA1+43417397..43419265transposon protein, putative, Mutator sub-class
LOC_Os01g74410Os.408.1.S1_a_at11/111+43423249..43424821Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g74430OsAffx.7575.4.A1_at11/111+43431289..43431711hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32602.1.S1_at--916--851Chr01:43405999..43406023 (25 bp)
ATGGCGTCCCGAGGAGGCAACAGCT
LOC_Os01g74370
Os.32602.1.S1_at--541--991Chr01:43405988..43406012 (25 bp)
AGGAGGCAACAGCTGCACGCCAAAT
LOC_Os01g74370
Os.32602.1.S1_at--147--5651Chr01:43405946..43405970 (25 bp)
GACAGCCCGGAGACAGATCAGATCA
LOC_Os01g74370
Os.32602.1.S1_at--132--2711Chr01:43405884..43405908 (25 bp)
AAGCTAATGCTCTTGTCAGGCAACT
LOC_Os01g74370
Os.32602.1.S1_at--846--10811Chr01:43405872..43405896 (25 bp)
TTGTCAGGCAACTCATCCATCGAAT
LOC_Os01g74370
Os.32602.1.S1_at--912--731Chr01:43405838..43405862 (25 bp)
ATGTTTCTTCTGTTACTAGTACTAC
LOC_Os01g74370
Os.32602.1.S1_at--757--1191Chr01:43405771..43405795 (25 bp)
AGTTAGTTTGTTCGTTTGAGCGCGC
LOC_Os01g74370
Os.32602.1.S1_at--950--6851Chr01:43405758..43405782 (25 bp)
GTTTGAGCGCGCGATTCGATCAGTT
LOC_Os01g74370
Os.32602.1.S1_at--19--6591Chr01:43405746..43405770 (25 bp)
GATTCGATCAGTTGGTGTGAAAACG
LOC_Os01g74370
Os.32602.1.S1_at--362--2511Chr01:43405691..43405715 (25 bp)
AACATCTGTGTAATCTCGTCTTTTA
LOC_Os01g74370
Os.32602.1.S1_at--77--3091Chr01:43405650..43405674 (25 bp)
AATCAATGTCAGATGATTGTCACCC
NONE
Target Sequence 
ATGGCGTCCCGAGGAGGCAACAGCTGCACGCCAAATCGACGGCGGCGCGCATGGACAGCCCGGAGACAGATCAGATCAGA
TCATAGAGGAGGGGATCAGCAAGCTAAGCTAAGCTAAGCTAATGCTCTTGTCAGGCAACTCATCCATCGAATGATACCAA
AATGTTTCTTCTGTTACTAGTACTACACTAGTTAGTTATTTTATTTCCCTTTTTTTTTCATTTCAACAAGTTAGTTTGTT
CGTTTGAGCGCGCGATTCGATCAGTTGGTGTGAAAACGAAAACGAAAACGATGGAACACACGTATAAAAACATCTGTGTA
ATCTCGTCTTTTATTAACTTAAGGGAATCAATCAATGTCAGATGATTGTCACCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32602.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis