Browse Element(s) Details


Os.32925.2.S1_x_at

Description gb:NM_188443.1
DB_XREF= gi:34903969
GEN=OSJNBa0038J17.30
TID=Os.32925.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.32925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OSJNBa0038J17.30 (OSJNBa0038J17.30), mRNA
DEF=Oryza sativa (japonica cultivar-group) OSJNBa0038J17.30 (OSJNBa0038J17.30), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1170011/11GDSL-like Lipase/Acylhydrolase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g11650Os.3850.3.S1_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.3850.1.S1_a_at11/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11650Os.54974.1.S1_x_at1/111+6275322..6280450GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11660Os.33387.1.S1_at11/111+6285167..6289103GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11670Os.45963.1.S1_x_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11670Os.45963.1.S1_at2/111+6292793..6294136Serine carboxypeptidase family protein
LOC_Os01g11680OsAffx.25108.4.S1_s_at11/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.25108.1.S1_x_at7/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11680OsAffx.6420.1.S1_at1/111+6295746..6298199transposon protein, putative, unclassified
LOC_Os01g11690OsAffx.22111.1.S1_x_at4/111+6300364..6300624hypothetical protein
LOC_Os01g11700Os.32925.2.S1_x_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.2.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11700Os.32925.1.S1_at11/111+6301604..6303407GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11704OsAffx.22109.1.S1_at7/111+6308736..6310451hypothetical protein
LOC_Os01g11704Os.52239.1.S1_at1/111+6308736..6310451hypothetical protein
LOC_Os01g11710Os.10533.1.S1_at11/111+6315932..6319253GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os01g11720OsAffx.32083.2.S1_x_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.22108.1.S1_at11/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_at5/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.1.S1_x_at2/111+6324888..6330214Transposable element protein, putative, Transposase_24
LOC_Os01g11720OsAffx.32083.3.S1_x_at1/111+6324888..6330214Transposable element protein, putative, Transposase_24

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Gene Ontology Classification
GO idTypeName
GO:0016298molecular_functionlipase activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32925.2.S1_x_at--183--7231Chr01:6302364..6302388 (25 bp)
GTCGACGAGGCGAGGTCTCTCACAC
LOC_Os01g11700
Os.32925.2.S1_x_at--1063--3291Chr01:6302491..6302511 (21 bp)
CACACAGAAACTCATCGACGGCGGC
LOC_Os01g11700
Os.32925.2.S1_x_at--956--8791Chr01:6302522..6302546 (25 bp)
TGTTCGTGTCGGGAATCACGCCGAT
LOC_Os01g11700
Os.32925.2.S1_x_at--133--7711Chr01:6302548..6302572 (25 bp)
GGGTGCTCGTCAGCGAACCTCGTGC
LOC_Os01g11700
Os.32925.2.S1_x_at--234--9331Chr01:6302576..6302600 (25 bp)
TCGCGGGCTCAAGCGAAGCGGACTA
LOC_Os01g11700
Os.32925.2.S1_x_at--176--2651Chr01:6302591..6302615 (25 bp)
AAGCGGACTACGAGCCGGACACCGG
LOC_Os01g11700
Os.32925.2.S1_x_at--368--8711Chr01:6302639..6302663 (25 bp)
TGTCCATGGAGCACAACCGGCAGCT
LOC_Os01g11700
Os.32925.2.S1_x_at--500--6171Chr01:6302694..6302718 (25 bp)
GAGGATCATCTACGGCGACTTCTAC
LOC_Os01g11700
Os.32925.2.S1_x_at--797--7731Chr01:6302889..6302913 (25 bp)
GGTGGGCGGTACAACTTCGAGTTCA
LOC_Os01g11700
Os.32925.2.S1_x_at--634--10631Chr01:6302904..6302928 (25 bp)
TTCGAGTTCAACATGAGCGCGCAGT
LOC_Os01g11700
Os.32925.2.S1_x_at--608--1711Chr01:6303013..6303037 (25 bp)
ACCACGTCGCCGATGGGTGGCTAAG
LOC_Os01g11700
Target Sequence 
GTCGACGAGGCGAGGTCTCTCACACCCCGAGTCGTCGGAACCATCCGCGCGGCCACACAGAAACTCATCGACGGCGGCGC
GAGGACGGTGTTCGTGTCGGGAATCACGCCGATGGGGTGCTCGTCAGCGAACCTCGTGCTGTTCGCGGGCTCAAGCGAAG
CGGACTACGAGCCGGACACCGGCTGCCTGAGGAGCCTGAACCTGCTGTCCATGGAGCACAACCGGCAGCTACGCCACGCC
CTGGCGCAGCTCGGCGGCGCGAGGATCATCTACGGCGACTTCTACACCCCCCTCGTCGAGCTCGCCGCGACGCCGCGCCG
CTTCGGGATCGACGGGGAGGAGGGCGCGCTGAGAGCTTGCTGCGGCAGCGGCGGTGGGCGGTACAACTTCGAGTTCAACA
TGAGCGCGCAGTGCGGCATGGCGGGGGTGACCGTGTGCGGCGACCCGTCGGCGTACGTGAACTGGGACGGCGTGCACCTC
ACCGAGGCGGCGTACCACCACGTCGCCGATGGGTGGCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32925.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis