Browse Element(s) Details


Os.33175.1.S1_at

Description gb:AK063911.1
DB_XREF= gi:32973929
TID=Os.33175.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33175 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0686E09.9 (P0686E09.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-A07, full insert sequence.
FL= gb:AK063911.1 gb:AK101490.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4299011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42960OsAffx.11449.1.S1_at11/111+24787885..24791118TPR Domain containing protein, expressed
LOC_Os01g42970Os.1486.1.S1_s_at10/111+24798779..24805279expressed protein
LOC_Os01g42970Os.46377.1.S1_at10/111+24798779..24805279expressed protein
LOC_Os01g42980Os.1487.1.S1_at11/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42980Os.1487.2.S1_x_at10/111+24807746..24810562ribosomal protein L22 family protein, putative, expressed
LOC_Os01g42990OsAffx.11451.4.S1_x_at11/111+24811397..24814679expressed protein
LOC_Os01g42990Os.33175.1.S1_at11/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.3.S1_x_at7/111+24811397..24814679expressed protein
LOC_Os01g42990OsAffx.11451.2.S1_x_at4/111+24811397..24814679expressed protein
LOC_Os01g43000OsAffx.11451.5.S1_x_at11/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43000OsAffx.11451.5.S1_at10/111+24815746..24818240transposon protein, putative, unclassified
LOC_Os01g43010OsAffx.26141.4.S1_at11/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.4.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.26141.3.S1_x_at9/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010Os.57359.1.S1_at8/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.3.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43010OsAffx.11451.2.S1_x_at1/111+24818773..24824728hAT family dimerisation domain containing protein, expressed
LOC_Os01g43020Os.16523.1.S1_at11/111+24825687..24831704CTP synthase, putative, expressed
LOC_Os01g43020OsAffx.24925.1.S1_x_at1/111+24825687..24831704CTP synthase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33175.1.S1_at--757--9171Chr01:24812524..24812548 (25 bp)
TGCCGCGTGAGCTCTCGCAGTAATT
LOC_Os01g42990
Os.33175.1.S1_at--907--4811Chr01:24812534..24812558 (25 bp)
GCTCTCGCAGTAATTTGGTCGTGTT
LOC_Os01g42990
Os.33175.1.S1_at--862--7751Chr01:24812550..24812574 (25 bp)
GGTCGTGTTCGTGGTTTTAGCAAAT
LOC_Os01g42990
Os.33175.1.S1_at--367--5131Chr01:24812569..24812593 (25 bp)
GCAAATTTGCATTCGTGGTAATACG
LOC_Os01g42990
Os.33175.1.S1_at--1012--10311Chr01:24812609..24812633 (25 bp)
TTTAGGATTTTAGGGCTGGATCAAT
LOC_Os01g42990
Os.33175.1.S1_at--1037--5371Chr01:24812636..24812660 (25 bp)
GAAGCAAATTCTGAGGATGCGAGAA
LOC_Os01g42990
Os.33175.1.S1_at--578--9131Chr01:24812653..24812677 (25 bp)
TGCGAGAATCACTCAAATTTTGTCA
LOC_Os01g42990
Os.33175.1.S1_at--887--2391Chr01:24812677..24812701 (25 bp)
AAACTAGCTTCTTGAATCACACCAT
LOC_Os01g42990
Os.33175.1.S1_at--49--5251Chr01:24812690..24812714 (25 bp)
GAATCACACCATAAAACTTCTTTAA
LOC_Os01g42990
Os.33175.1.S1_at--742--2051Chr01:24812705..24812729 (25 bp)
ACTTCTTTAATGTGATGTCTCGTTG
LOC_Os01g42990
Os.33175.1.S1_at--143--9511Chr01:24812722..24812746 (25 bp)
TCTCGTTGTAATGATTGATCTTGTT
LOC_Os01g42990
Target Sequence 
TGCCGCGTGAGCTCTCGCAGTAATTTGGTCGTGTTCGTGGTTTTAGCAAATTTGCATTCGTGGTAATACGAAGACCATAT
AATGGTTTAGGATTTTAGGGCTGGATCAATAAGAAGCAAATTCTGAGGATGCGAGAATCACTCAAATTTTGTCAAACTAG
CTTCTTGAATCACACCATAAAACTTCTTTAATGTGATGTCTCGTTGTAATGATTGATCTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33175.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis