Browse Element(s) Details


Os.33563.1.A1_at

Description gb:AK100105.1
DB_XREF= gi:32985314
TID=Os.33563.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33563 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023004L24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023004L24, full insert sequence.
FL= gb:AK100105.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1482011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14770OsAffx.22233.5.S1_x_at11/111+8256318..8258315expressed protein
LOC_Os01g14780NANA1+8264713..8266071hypothetical protein
LOC_Os01g14790Os.49444.1.S1_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.49444.1.S1_s_at11/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_x_at10/111+8266390..8269429expressed protein
LOC_Os01g14790Os.38074.1.S1_at7/111+8266390..8269429expressed protein
LOC_Os01g14790OsAffx.20033.1.S1_at1/111+8266390..8269429expressed protein
LOC_Os01g14800OsAffx.22232.1.S1_at7/111+8270288..8270743hypothetical protein
LOC_Os01g14810Os.14625.1.S1_at11/111+8272276..82807615' nucleotidase family protein, putative, expressed
LOC_Os01g14820Os.33563.1.A1_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_x_at11/111+8281271..8285922expressed protein
LOC_Os01g14820Os.43805.1.S1_at11/111+8281271..8285922expressed protein
LOC_Os01g14830Os.9946.1.S1_at11/111+8288164..829295950S ribosomal protein L3-2, chloroplast precursor, putative, expressed
LOC_Os01g14840Os.307.1.S2_at11/111+8294417..8299203expressed protein
LOC_Os01g14840Os.307.1.S1_at11/111+8294417..8299203expressed protein
LOC_Os01g14850Os.9962.1.S1_s_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_x_at11/111+8302510..8303347expressed protein
LOC_Os01g14850Os.45916.1.S1_s_at9/111+8302510..8303347expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009941cellular_componentchloroplast envelope
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33563.1.A1_at--677--1331Chr01:8285399..8285423 (25 bp)
AGAGGTTGGCTCATCGTATCACATA
LOC_Os01g14820
Os.33563.1.A1_at--803--6531Chr01:8285429..8285453 (25 bp)
GATTTTCAAAGGCTTTCTTTCTCGT
LOC_Os01g14820
Os.33563.1.A1_at--404--10311Chr01:8285442..8285466 (25 bp)
TTTCTTTCTCGTATTGGTGCCAATG
LOC_Os01g14820
Os.33563.1.A1_at--865--7111Chr01:8285475..8285499 (25 bp)
GTCAGGTGACTGTAGATGTTACGCA
LOC_Os01g14820
Os.33563.1.A1_at--329--731Chr01:8285490..8285514 (25 bp)
ATGTTACGCAGTGTGCTTCATCAAG
LOC_Os01g14820
Os.33563.1.A1_at--206--1211Chr01:8285535..8285559 (25 bp)
AGTTTATCTCGGTGTCTTGCATTCA
LOC_Os01g14820
Os.33563.1.A1_at--24--10731Chr01:8285551..8285575 (25 bp)
TTGCATTCACCTGTTGAAGACTGTT
LOC_Os01g14820
Os.33563.1.A1_at--521--6931Chr01:8285582..8285606 (25 bp)
GTAGGCTGTAGTTCTGTTCATTGGT
LOC_Os01g14820
Os.33563.1.A1_at--722--8671Chr01:8285733..8285757 (25 bp)
TGTGTTTCATACTTGCTTTGGGCAT
LOC_Os01g14820
Os.33563.1.A1_at--520--231Chr01:8285810..8285834 (25 bp)
ATATTCATCCACTGATTGCTCGGTC
LOC_Os01g14820
Os.33563.1.A1_at--842--6571Chr01:8285823..8285847 (25 bp)
GATTGCTCGGTCAGGCCTGAAGAGT
LOC_Os01g14820
Target Sequence 
AGAGGTTGGCTCATCGTATCACATAAACATGATTTTCAAAGGCTTTCTTTCTCGTATTGGTGCCAATGAGAACTAGGTCA
GGTGACTGTAGATGTTACGCAGTGTGCTTCATCAAGGCAGTTTGTAGATGTGATCAAGTTTATCTCGGTGTCTTGCATTC
ACCTGTTGAAGACTGTTATTCTTGTAGGCTGTAGTTCTGTTCATTGGTTAAAACAGCTTGCTGTTTAACAGGCAATGAGC
CTTGACGGAGGGNAGTTNTTAGATTGTTTNGGTTCTGTAGAATAGTGTAGTTATGCAATAAGTCAATACGTGTCGACGNC
AATATATTTCTAGTTGTGTTTCATACTTGCTTTGGGCATCNGAAGAATACTTGCTGATGTAAGTGATCGTCATCTGAATN
CCGTCTGTTATATATTCATCCACTGATTGCTCGGTCAGGCCTGAAGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33563.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis