Browse Element(s) Details


Os.33605.2.S1_x_at

Description gb:AK069643.1
DB_XREF= gi:32979667
TID=Os.33605.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33605 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0421H07.18 (P0421H07.18), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023027O19, full insert sequence.
FL= gb:AK069643.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5075011/11zinc finger family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50710OsAffx.21477.2.S1_at11/111+29457776..29458576hypothetical protein
LOC_Os01g50720Os.45892.1.S1_at11/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50720Os.57514.1.S1_x_at1/111+29459046..29460756Myb-related protein Hv33, putative, expressed
LOC_Os01g50730Os.29800.1.S1_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.2.S1_s_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730Os.29800.1.S2_x_at11/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50730OsAffx.21476.1.S1_at1/111+29472540..29474953Poly polymerase central domain containing protein
LOC_Os01g50740NANA1+29475999..29476460hypothetical protein
LOC_Os01g50750Os.33605.1.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_x_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50750Os.33605.2.S1_at11/111+29479576..29481671zinc finger family protein, putative, expressed
LOC_Os01g50760Os.12161.1.S1_at11/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50760Os.52834.1.S1_at1/111+29485110..29489433Farnesyl pyrophosphate synthetase, putative, expressed
LOC_Os01g50770Os.38379.1.S1_at11/111+29493268..29497258Adaptor-related protein complex 1, mu 1 subunit, putative, expressed
LOC_Os01g50780OsAffx.2294.2.S1_at11/111+29498091..29499649hypothetical protein
LOC_Os01g50790NANA1+29501344..29503296transposon protein, putative, unclassified
LOC_Os01g50800Os.41695.15.S1_s_at7/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.3.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.2.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.5.S1_x_at4/111+29505822..29509584hypothetical protein
LOC_Os01g50800Os.41695.4.S1_x_at1/111+29505822..29509584hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33605.2.S1_x_at--739--7251Chr01:29481006..29481030 (25 bp)
GTCCTTGCTTTTACATACTTACTGG
LOC_Os01g50750
Os.33605.2.S1_x_at--557--971Chr01:29481042..29481066 (25 bp)
AGGAGTGCTGCATATGCCTGGCTCA
LOC_Os01g50750
Os.33605.2.S1_x_at--681--5091Chr01:29481102..29481126 (25 bp)
GCACGCACATGTTCCACCTGAAATG
LOC_Os01g50750
Os.33605.2.S1_x_at--487--8531Chr01:29481129..29481153 (25 bp)
TGGACAGGTGGCTCAGGATCATCTC
LOC_Os01g50750
Os.33605.2.S1_x_at--920--3091Chr01:29481205..29481229 (25 bp)
AATACGGAGCTACTGATACCGCGCC
LOC_Os01g50750
Os.33605.2.S1_x_at--434--611Chr01:29481239..29481263 (25 bp)
ATGCGTCGCACCTCACGGAAGAAGA
LOC_Os01g50750
Os.33605.2.S1_x_at--787--611Chr01:29481299..29481323 (25 bp)
ATGCGTGCACTGACCTAGTTCGATA
LOC_Os01g50750
Os.33605.2.S1_x_at--750--6631Chr01:29481467..29481491 (25 bp)
GTTGTTGCATCTCTCGAATGTGGTC
LOC_Os01g50750
Os.33605.2.S1_x_at--132--7211Chr01:29481489..29481513 (25 bp)
GTCGATCGAGATGCGCGTGTACGTA
LOC_Os01g50750
Os.33605.2.S1_x_at--1017--231Chr01:29481543..29481567 (25 bp)
ATATACCAGGGTTTGCGCTCGTGCT
LOC_Os01g50750
Os.33605.2.S1_x_at--50--9231Chr01:29481567..29481591 (25 bp)
TCCAGCGAATGCCAACCCAAAGGTA
LOC_Os01g50750
Target Sequence 
GTCCTTGCTTTTACATACTTACTGGAATTAAATGGCAGGAGTGCTGCATATGCCTGGCTCAGTACAAGGAGAAGGAGGAG
GTGAGGCAGCTGCCGTGCACGCACATGTTCCACCTGAAATGCGTGGACAGGTGGCTCAGGATCATCTCCTCTTGCCCTCT
CTGCAAGCAAGAGCTCAGCTAGAAAAACAAGCTGACATGAATACGGAGCTACTGATACCGCGCCTTCCGACGCATGCGTC
GCACCTCACGGAAGAAGAAAAAGAAAAGAAAAAAAAACCCTGGCACGCCAACCATGCGTGCACTGACCTAGTTCGATATT
GCTGATGACGGCACGATGAATATTTATGCATACACTTGCATGTGAAAAAGATATGCTTGGATTAATTAGGCTAGGTAGAC
AAGCGGGAAATGTGTAAAAGAGTTTTTTTGTGTGTGTGTGTGTGTGTGTGTTGTTTGCGGTGTTGTTGCATCTCTCGAAT
GTGGTCGATCGAGATGCGCGTGTACGTAGTTTTTTTCAGCAGAAACCAAACGAGAACATATACCAGGGTTTGCGCTCGTG
CTCCAGCGAATGCCAACCCAAAGGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33605.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis