Browse Element(s) Details


Os.33610.3.S1_s_at

Description gb:AK099861.1
DB_XREF= gi:32985070
TID=Os.33610.3
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative dihydropyrimidinase (P0702B09.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013110N21, full insert sequence.
FL= gb:AK099861.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5934011/11D-hydantoinase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g59280OsAffx.31780.2.S1_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_s_at8/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.2.S1_x_at5/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.38172.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.43567.1.S1_x_at3/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280Os.29987.1.S1_at2/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59280OsAffx.31780.1.S1_at1/111+34595533..34599269transposon protein, putative, unclassified
LOC_Os01g59290OsAffx.23853.1.S1_at11/111+34601599..34602147hypothetical protein
LOC_Os01g59300OsAffx.11658.1.S1_at10/111+34604010..34607660hypothetical protein
LOC_Os01g59310NANA1+34609413..34609757hypothetical protein
LOC_Os01g59320Os.33610.4.S1_x_at11/111+34619926..34622423expressed protein
LOC_Os01g59320Os.33610.2.A1_at11/111+34619926..34622423expressed protein
LOC_Os01g59340Os.33610.3.S1_x_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.33610.3.S1_s_at11/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59340Os.40338.1.S1_at1/111+34622500..34632810D-hydantoinase family protein, expressed
LOC_Os01g59350Os.35049.1.S1_a_at10/111+34633377..34640164Transcription factor HBP-1b, putative, expressed
LOC_Os01g59360Os.42230.1.S1_at10/111+34652159..34654737Calcium-dependent protein kinase, isoform 2, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0010136biological_processureide catabolism
GO:0004038molecular_functionallantoinase activity
GO:0004157molecular_functiondihydropyrimidinase activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33610.3.S1_s_at--542--10591Chr01:34632504..34632528 (25 bp)
TTCTGAACGTTGTTCCCGGTTCAGG
LOC_Os01g59340
Os.33610.3.S1_s_at--476--8971Chr01:34632507..34632531 (25 bp)
TGAACGTTGTTCCCGGTTCAGGAAG
LOC_Os01g59340
Os.33610.3.S1_s_at--210--1571Chr01:34632554..34632578 (25 bp)
AGCTACCTGTTTGATGGCATTGAAA
LOC_Os01g59340
Os.33610.3.S1_s_at--899--4851Chr01:34632555..34632579 (25 bp)
GCTACCTGTTTGATGGCATTGAAAA
LOC_Os01g59340
Os.33610.3.S1_s_at--1016--4251Chr01:34632559..34632583 (25 bp)
CCTGTTTGATGGCATTGAAAAGTCA
LOC_Os01g59340
Os.33610.3.S1_s_at--369--10611Chr01:34632606..34632630 (25 bp)
TTCGTGCCCCTGTGAAACGTGGCAA
LOC_Os01g59340
Os.33610.3.S1_s_at--160--4011Chr01:34632608..34632632 (25 bp)
CGTGCCCCTGTGAAACGTGGCAAGG
LOC_Os01g59340
Os.33610.3.S1_s_at--559--9791Chr01:34632641..34632665 (25 bp)
TAACGATGCCCGCTGCTGATGAACT
LOC_Os01g59340
Os.33610.3.S1_s_at--133--2591Chr01:34632642..34632666 (25 bp)
AACGATGCCCGCTGCTGATGAACTA
LOC_Os01g59340
Os.33610.3.S1_s_at--756--4051Chr01:34632644..34632668 (25 bp)
CGATGCCCGCTGCTGATGAACTACA
LOC_Os01g59340
Os.33610.3.S1_s_at--928--451Chr01:34632735..34632759 (25 bp)
ATCTCATTATTCATATCATTTTCTG
LOC_Os01g59340
Target Sequence 
TTCTGAACGTTGTTCCCGGTTCAGGAAGATACGTCAGAACACCGCCTTACAGCTACCTGTTTGATGGCATTGAAAAGTCA
GACGCTGCCTACAGAGCCTCCCTTCGTGCCCCTGTGAAACGTGGCAAGGCTGCTGCTTAACGATGCCCGCTGCTGATGAA
CTACAGAACTAGTTTCTCCAAGGTGAACGACGTCTGCTCCATGCGTAACTTCCTTGTGTTTGTGTATACAGATCTCATTA
TTCATATCATTTTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33610.3.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis