Browse Element(s) Details


Os.33730.1.S1_a_at

Description gb:AK064923.1
DB_XREF= gi:32974941
TID=Os.33730.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.33730 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023146P18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000N14, full insert sequence.
FL= gb:AK099309.1 gb:AK064923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3180011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g31748Os.57420.1.S1_at11/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31748Os.25415.1.A1_s_at9/1112+19077506..19086702K-box region family protein, expressed
LOC_Os12g31770Os.55616.1.S1_at11/1112+19090750..19093994expressed protein
LOC_Os12g31770OsAffx.31487.1.S1_at4/1112+19090750..19093994expressed protein
LOC_Os12g31780Os.6837.1.S1_at11/1112+19093206..19095831Nitrilase-associated protein, putative, expressed
LOC_Os12g31790OsAffx.7757.1.S1_at10/1112+19097739..19101112expressed protein
LOC_Os12g31800Os.33730.1.S1_a_at11/1112+19101364..19105176RNA recognition motif family protein, expressed
LOC_Os12g31810Os.9590.1.S1_at11/1112+19109861..19114981Cyclin, N-terminal domain containing protein, expressed
LOC_Os12g31820Os.47882.1.A1_at11/1112+19118818..19122389Phosphoserine phosphatase, putative, expressed
LOC_Os12g31830Os.50259.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830Os.17668.1.S1_at11/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31830OsAffx.18661.1.S1_at1/1112+19122626..19127453hydrolase, carbon-nitrogen family protein, expressed
LOC_Os12g31840Os.17592.1.S1_at10/1112+19129531..19133065DnaJ domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007623biological_processcircadian rhythm
GO:0005634cellular_componentnucleus
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.33730.1.S1_a_at--783--6351Chr12:19104731..19104755 (25 bp)
GATGCCTTCTCTGGAATCAACTTAG
LOC_Os12g31800
Os.33730.1.S1_a_at--94--10791Chr12:19104771..19104795 (25 bp)
TTGGTGGAAACCCAGCTGGAAGCTT
LOC_Os12g31800
Os.33730.1.S1_a_at--760--7491Chr12:19104843..19104867 (25 bp)
GTGGTGACAGCTTTGGAAGCCGCAA
LOC_Os12g31800
Os.33730.1.S1_a_at--418--6311Chr12:19104872..19104896 (25 bp)
GATGAGCTCATGGATGACCTCTTCA
LOC_Os12g31800
Os.33730.1.S1_a_at--664--5831Chr12:19104887..19104911 (25 bp)
GACCTCTTCAAGGATGACGAGCCTG
LOC_Os12g31800
Os.33730.1.S1_a_at--888--1851Chr12:19104903..19104927 (25 bp)
ACGAGCCTGACAACTATGCCAACAA
LOC_Os12g31800
Os.33730.1.S1_a_at--765--8311Chr12:19104932..19104956 (25 bp)
GGCTAATTAATCTACGTCCTTCGAG
LOC_Os12g31800
Os.33730.1.S1_a_at--1061--1671Chr12:19104955..19104979 (25 bp)
AGCCTCAGTTTGCAGTCTCTTAGTG
LOC_Os12g31800
Os.33730.1.S1_a_at--343--8871Chr12:19104978..19105002 (25 bp)
TGATGAACCGGCTCACCTGAATGGT
LOC_Os12g31800
Os.33730.1.S1_a_at--326--9011Chr12:19104995..19105019 (25 bp)
TGAATGGTCATCACCTGCTCAAGCA
LOC_Os12g31800
Os.33730.1.S1_a_at--153--2091Chr12:19105099..19105123 (25 bp)
ACATCACTCAAGGTACTACTTCTAG
LOC_Os12g31800
Target Sequence 
GATGCCTTCTCTGGAATCAACTTAGGTGGTGATGGTAGTTTTGGTGGAAACCCAGCTGGAAGCTTTGGTGATGCTGGAGG
TTCCACTGGCGGTGGTGATTTCTCCGGTGCCGGTGGTGACAGCTTTGGAAGCCGCAAGAACGATGAGCTCATGGATGACC
TCTTCAAGGATGACGAGCCTGACAACTATGCCAACAAGCAGGGCTAATTAATCTACGTCCTTCGAGCCTCAGTTTGCAGT
CTCTTAGTGATGAACCGGCTCACCTGAATGGTCATCACCTGCTCAAGCATCAAATTCCAGAACAATACACAATGACTGGG
TTTTCTTTTTCTTCTGTTCTTTTTCATAGATGTGGTGTAATAACGTAAACATCACTCAAGGTACTACTTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.33730.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis