Browse Element(s) Details


Os.34006.1.S1_x_at

Description gb:AK073190.1
DB_XREF= gi:32983213
TID=Os.34006.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34006 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033011P14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033011P14, full insert sequence.
FL= gb:AK073190.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g163503/11expressed protein
LOC_Os08g046201/11Membrane associated protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16300OsAffx.17023.1.S1_at11/118+9947192..9948950hypothetical protein
LOC_Os08g16300Os.53644.1.S1_at1/118+9947192..9948950hypothetical protein
LOC_Os08g16310Os.9691.1.S1_at2/118+9949447..9950942hypothetical protein
LOC_Os08g16320OsAffx.5840.1.S1_x_at1/118+9952630..9954132Cytochrome P450 family protein
LOC_Os08g16330Os.4930.1.S1_at11/118+9958642..9959397expressed protein
LOC_Os08g16340OsAffx.23366.1.S1_at1/118+9960064..9963574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16340OsAffx.23366.2.S1_s_at1/118+9960064..9963574transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g16350Os.17702.2.S1_x_at11/118+9970633..9973632expressed protein
LOC_Os08g16350Os.17702.1.S1_at10/118+9970633..9973632expressed protein
LOC_Os08g16350Os.34006.1.S1_x_at3/118+9970633..9973632expressed protein
LOC_Os08g16350Os.34006.2.S1_x_at3/118+9970633..9973632expressed protein
LOC_Os08g16360NANA8+9978264..9978593expressed protein
LOC_Os08g16370NANA8+9979651..9984243transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006970biological_processresponse to osmotic stress
GO:0005886cellular_componentplasma membrane
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34006.1.S1_x_at--470--2131Chr11:14737378..14737402 (25 bp)
ACAGTACATAGTCCTTGCTTGTCTC
NONE
Os.34006.1.S1_x_at--392--694Chr11:14737431..14737455 (25 bp)
ATGAGCCTGGGAAGCAAGTCGATCT
NONE
Os.34006.1.S1_x_at--207--3231Chr11:14737445..14737469 (25 bp)
CAAGTCGATCTGGAGTGCTGTCAAG
NONE
Os.34006.1.S1_x_at--763--7511Chr11:14738656..14738680 (25 bp)
GTGGAGCATGCCGATGCTACCGACT
NONE
Os.34006.1.S1_x_at--346--9971Chr11:14738673..14738697 (25 bp)
TACCGACTCCACCATGGATGTAGCT
NONE
Os.34006.1.S1_x_at--1085--4992Chr11:14738699..14738723 (25 bp)
GCAGTGGGATTTTGACGTCGACCGT
NONE
Os.34006.1.S1_x_at--449--7011Chr11:14738764..14738788 (25 bp)
GTACTCGCTTCATCTCAATATGTAG
NONE
Os.34006.1.S1_x_at--553--10111Chr11:14738782..14738806 (25 bp)
TATGTAGCAACCTCTTCCAGATTTG
NONE
Os.34006.1.S1_x_at--993--1191Chr11:14738814..14738838 (25 bp)
AGTATTGGTTTAATCTCATCCTAGA
NONE
Os.34006.1.S1_x_at--771--7432Chr11:14738911..14738935 (25 bp)
GTGTATGTCTATTTCCCATCTGTAA
NONE
Os.34006.1.S1_x_at--997--931Chr11:14738948..14738972 (25 bp)
AGGAACCAGCCAACACCGTAATATT
NONE
Target Sequence 
ACAGTACATAGTCCTTGCTTGTCTCTGACTTTGCTCTCTACTNATAGGTACAGATGAGCCTGGGAAGCAAGTCGATCTGG
AGTGCTGTCAAGATCAAGAACATCAGCAAGTCTAAATGTAGCATTTAAGGGTGAAGGTTGGATCCTCGGTGGAGCATGCC
GATGCTACCGACTCCACCATGGATGTAGCTGGCAGTGGGATTTTGACGTCGACCGTGAGTCTTCGGCACCGGCGATGGTA
TTTGGCGAGTTGGGATGTACTCGCTTCATCTCAATATGTAGCAACCTCTTCCAGATTTGTAGTTCTAGTATTGGTTTAAT
CTCATCCTAGATTGTAACATATTGCGACGGAGGGAGTAGTCATTGGTTACAATCTTCTTGATTTTTTTTATCAAAATGAA
TATGTGTATGTCTATTTCCCATCTGTAATTTTTATTGGTAAGGAACCAGCCAACACCGTAATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34006.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis