Browse Element(s) Details


Os.34118.1.S1_at

Description gb:AK072776.1
DB_XREF= gi:32982799
TID=Os.34118.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34118 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OSJNBb0028C01.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023137P05, full insert sequence.
FL= gb:AK072776.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g378705/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g37830Os.3246.2.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.3246.1.S1_at11/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37830Os.19456.1.S1_x_at2/1110+19922499..19924923F-box family protein, putative, expressed
LOC_Os10g37840OsAffx.6896.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.23270.1.S1_at11/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_x_at10/1110+19927329..19933081expressed protein
LOC_Os10g37840Os.51255.1.S1_at9/1110+19927329..19933081expressed protein
LOC_Os10g37850Os.6846.1.S1_at11/1110+19935538..19937927Armadillo/beta-catenin-like repeat family protein, expressed
LOC_Os10g37860Os.3241.1.S1_at9/1110+19941268..19942672expressed protein
LOC_Os10g37870Os.34118.1.S1_at5/1110+19948495..19948802hypothetical protein
LOC_Os10g37880Os.12222.1.S1_a_at11/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37880Os.47280.1.S1_x_at2/1110+19951767..19955325oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os10g37899Os.14049.1.S1_at11/1110+19963523..19969776transposon protein, putative, unclassified, expressed
LOC_Os10g37899Os.52772.1.S1_at1/1110+19963523..19969776transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34118.1.S1_at--168--6571Chr10:19948627..19948651 (25 bp)
GATTCTCCGGGCTCAACGACAACAT
LOC_Os10g37870
Os.34118.1.S1_at--1097--2491Chr10:19948607..19948631 (25 bp)
AACATGGTCTTCGTGCTCTGAGAAA
LOC_Os10g37870
Os.34118.1.S1_at--1115--7771Chr10:19948562..19948586 (25 bp)
GGTGCTTTTCTTGGTTGATCTAGTC
LOC_Os10g37870
Os.34118.1.S1_at--740--9391Chr10:19948542..19948566 (25 bp)
TAGTCGGAAACTCAGATGGCTTTTG
LOC_Os10g37870
Os.34118.1.S1_at--176--7791Chr10:19948512..19948536 (25 bp)
GGTGCTGGATTATTGCTGATGCTAA
LOC_Os10g37870
Os.34118.1.S1_at--284--3151Chr10:19948489..19948513 (25 bp)
AATTCAGCTCGTGCTGTAGCTCTTC
NONE
Os.34118.1.S1_at--363--6971Chr10:19948474..19948498 (25 bp)
GTAGCTCTTCATCTCTTTCTCTTTT
NONE
Os.34118.1.S1_at--123--6371Chr10:19948437..19948461 (25 bp)
GATCCAAAGGAGTTCTCTCTCTGAA
NONE
Os.34118.1.S1_at--325--351Chr10:19948391..19948415 (25 bp)
ATAAGCTAGCTCCAGTAATCTGAGA
NONE
Os.34118.1.S1_at--644--1971Chr10:19948353..19948377 (25 bp)
ACTGCATTTTTCATCTTGTGTACCA
NONE
Os.34118.1.S1_at--39--2651NONE
AAGCTCAAGTGGTCTGAACTTACCT
NONE
Target Sequence 
GATTCTCCGGGCTCAACGACAACATGGTCTTCGTGCTCTGAGAAAGTCTGAAGAAGGTATATGTGGGTGCTTTTCTTGGT
TGATCTAGTCGGAAACTCAGATGGCTTTTGGCCATGGTGCTGGATTATTGCTGATGCTAATTCAGCTCGTGCTGTAGCTC
TTCATCTCTTTCTCTTTTTGTTCGTTGGAAGATCCAAAGGAGTTCTCTCTCTGAATTTTTCATCTTTCTGTGTACCATAA
GCTAGCTCCAGTAATCTGAGATGTACATGAACTTACTGCATTTTTCATCTTGTGTACCATAAGCAAAGCTCAAGTGGTCT
GAACTTACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34118.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis