Browse Element(s) Details


Os.34146.1.S1_at

Description gb:AK072695.1
DB_XREF= gi:32982718
TID=Os.34146.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34146 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein (OJ1111_B11.13), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136O11, full insert sequence.
FL= gb:AK072695.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6108011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g61040Os.36472.1.S1_x_at11/113+34614183..34615857expressed protein
LOC_Os03g61050Os.10437.1.S1_at11/113+34618943..34626838defective in exine formation protein, putative, expressed
LOC_Os03g61060Os.5010.1.S1_at11/113+34627221..34629671Protein kinase domain containing protein, expressed
LOC_Os03g61070Os.29893.1.S1_at10/113+34631845..34635132expressed protein
LOC_Os03g61080Os.34146.1.S1_at11/113+34639774..34644349expressed protein
LOC_Os03g61090Os.9885.2.S1_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.2.S1_x_at11/113+34645970..34646898expressed protein
LOC_Os03g61090Os.9885.1.S1_x_at10/113+34645970..34646898expressed protein
LOC_Os03g61100OsAffx.13565.1.S1_at11/113+34647337..34649979GONST2 Golgi Nucleotide sugar transporter, putative
LOC_Os03g61110Os.7367.1.S1_at11/113+34651731..34654040RNA recognition motif family protein, expressed
LOC_Os03g61120Os.4176.1.S1_at11/113+34654453..34660009anthranilate synthase component I family protein, expressed
LOC_Os03g61130Os.5082.1.S1_a_at11/113+34663260..34666244phosphoesterase family protein, putative, expressed
LOC_Os03g61140Os.17682.1.S1_at11/113+34667155..34670465expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34146.1.S1_at--976--5151Chr03:34640340..34640364 (25 bp)
GCAAGGTTGCTACATGGCCAAGACC
LOC_Os03g61080
Os.34146.1.S1_at--57--531Chr03:34640254..34640278 (25 bp)
ATCGACACGCATCCGTGGGCAAAGT
LOC_Os03g61080
Os.34146.1.S1_at--576--6071Chr03:34640228..34640252 (25 bp)
GAGTAGAAATTGCTGCCCTGTTTGG
LOC_Os03g61080
Os.34146.1.S1_at--479--5831Chr03:34640193..34640217 (25 bp)
GACCTGTTGAGGTTGTATGGCAAAC
LOC_Os03g61080
Os.34146.1.S1_at--249--4071Chr03:34640102..34640126 (25 bp)
GCTGGAATTCGGTGAGGGCATCAAC
LOC_Os03g61080
Os.34146.1.S1_at--706--7131Chr03:34640026..34640050 (25 bp)
GTCATACTGGAATTCCTCTCAGGAT
LOC_Os03g61080
Os.34146.1.S1_at--138--1211Chr03:34639970..34639994 (25 bp)
AGTTTGTACTTCGTGTTATTCATCA
LOC_Os03g61080
Os.34146.1.S1_at--269--6111Chr03:34639927..34639951 (25 bp)
GAGTGCAATGACGAGCCAGGATTTT
LOC_Os03g61080
Os.34146.1.S1_at--1061--3311Chr03:34639884..34639908 (25 bp)
CACATTGGGTGGTGTCTGTAACAGC
LOC_Os03g61080
Os.34146.1.S1_at--945--6671Chr03:34639842..34639866 (25 bp)
GTTGCCTTTTTTCTGGTCCATGATA
LOC_Os03g61080
Os.34146.1.S1_at--989--10011Chr03:34639819..34639843 (25 bp)
TAGAGGCTCAGTATAACATTTCATA
LOC_Os03g61080
Target Sequence 
GCAAGGTTGCTACATGGCCAAGACCACAAAGGAGGCTTCTGTTTGATCTTGCGAATTCTGTTCTTTCTGAGATCCTCGCA
CCATGCATCGACACGCATCCGTGGGCAAAGTTGAGTAGAAATTGCTGCCCTGTTTGGGGCCCTGAAGGACCTGTTGAGGT
TGTATGGCAAACAATGGTCAGGCAGCAGGAAGAGCTTGCTGTAGCACATCCTGATGACAAGATTCTTGATCCAGAATGGC
TGGAATTCGGTGAGGGCATCAACATGGTGGGATGGCATATAGCCAGGATGTTACATGGTGATCTCTTGGATGATGTCATA
CTGGAATTCCTCTCAGGATTTGTTGCTTCATGAGGAAAATTAATCAAATTAGTTTGTACTTCGTGTTATTCATCAATACT
AGTAACAGTAGTCGAGTGCAATGACGAGCCAGGATTTTGCCTGAAGAAACTTGAACCACATTGGGTGGTGTCTGTAACAG
CGTTTCAAGTGCACATATGTTGCCTTTTTTCTGGTCCATGATAGAGGCTCAGTATAACATTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34146.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis