Browse Element(s) Details

Os.34343.1.S2_s_at

Description

gb:AK111631.1
DB_XREF= gi:37988294
TID=Os.34343.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34343 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023111J08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013119L23, full insert sequence.
FL= gb:AK111631.1 gb:AK071785.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g45350	11/11	protein kinase, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g45310	OsAffx.5113.1.S1_at	10/11	6	+	27386884..27390193	SBP domain containing protein, expressed
LOC_Os06g45310	Os.51367.1.S1_x_at	1/11	6	+	27386884..27390193	SBP domain containing protein, expressed
LOC_Os06g45310	OsAffx.2442.1.S1_x_at	1/11	6	+	27386884..27390193	SBP domain containing protein, expressed
LOC_Os06g45320	OsAffx.15935.1.S1_at	11/11	6	+	27395212..27395879	hypothetical protein
LOC_Os06g45320	OsAffx.15935.1.S1_x_at	11/11	6	+	27395212..27395879	hypothetical protein
LOC_Os06g45330	Os.17695.1.S1_at	9/11	6	+	27396477..27399413	Endonuclease V, putative, expressed
LOC_Os06g45340	Os.47784.1.S1_at	11/11	6	+	27401469..27402749	FK506-binding protein, putative, expressed
LOC_Os06g45350	Os.34343.1.S2_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.34343.1.S1_a_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.49575.1.S1_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45350	Os.34343.1.S2_s_at	11/11	6	+	27411681..27416604	protein kinase, putative, expressed
LOC_Os06g45360	Os.51301.1.S1_at	11/11	6	+	27418371..27426848	metallopeptidase family M24 containing protein, expressed
LOC_Os06g45360	Os.51301.1.S1_x_at	11/11	6	+	27418371..27426848	metallopeptidase family M24 containing protein, expressed
LOC_Os06g45370	Os.15065.1.S1_at	11/11	6	+	27427893..27430110	fructose-1,6-bisphosphatase family protein, expressed
LOC_Os06g45380	OsAffx.28116.1.S1_s_at	11/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	OsAffx.28116.1.S1_x_at	11/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	Os.17353.1.S1_at	10/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45380	Os.20764.1.S1_s_at	1/11	6	+	27432423..27440151	Vacuolar sorting receptor 7 precursor, putative, expressed
LOC_Os06g45390	OsAffx.15936.1.S1_at	10/11	6	+	27440488..27443852	expressed protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005634	cellular_component	nucleus
GO:0005737	cellular_component	cytoplasm
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.34343.1.S2_s_at--45--559	1	Chr06:27415958..27415982 (25 bp)	GAAATGGCTCACATCCTAGCAGTGG	LOC_Os06g45350
Os.34343.1.S2_s_at--523--153	1	Chr06:27415975..27415999 (25 bp)	AGCAGTGGCATCCATGTGCATTCAC	LOC_Os06g45350
Os.34343.1.S2_s_at--22--77	1	Chr06:27415988..27416012 (25 bp)	ATGTGCATTCACCACAGCTCAAGCT	LOC_Os06g45350
Os.34343.1.S2_s_at--681--269	1	Chr06:27416008..27416032 (25 bp)	AAGCTCGCGGCCTAGCATGAAATCG	LOC_Os06g45350
Os.34343.1.S2_s_at--40--97	1	Chr06:27416183..27416207 (25 bp)	AGACCAAAACTCATGAAACCCCTCA	LOC_Os06g45350
Os.34343.1.S2_s_at--1127--1017	1	Chr06:27416234..27416258 (25 bp)	TATACTCGCTCAAGTTACCTCAACG	LOC_Os06g45350
Os.34343.1.S2_s_at--546--641	1	Chr06:27416258..27416282 (25 bp)	GATCTCGACCGGCACAAGAAGCTTG	LOC_Os06g45350
Os.34343.1.S2_s_at--1099--571	1	Chr06:27416313..27416337 (25 bp)	GACTGCCATCTTTTGTACATCATCA	LOC_Os06g45350
Os.34343.1.S2_s_at--443--1017	1	Chr06:27416342..27416366 (25 bp)	TATCAACATTGTGATCCTCCTCCTT	LOC_Os06g45350
Os.34343.1.S2_s_at--428--289	1	Chr06:27416407..27416431 (25 bp)	AAGGGTTCAGTTTATCAGTTGCTCC	LOC_Os06g45350
Os.34343.1.S2_s_at--311--41	1	Chr06:27416420..27416444 (25 bp)	ATCAGTTGCTCCCTTTGTTGCTGAT	LOC_Os06g45350

Target Sequence

GAAATGGCTCACATCCTAGCAGTGGCATCCATGTGCATTCACCACAGCTCAAGCTCGCGGCCTAGCATGAAATCGGTGGT
CCGTTTCTTGAAGGGGGATAGGGAATCACTCGAAATGATGCAAATGCAAAGACCAAAACTCATGAAACCCCTCATGTTCG
ACTCCGGNGATTCAGAGGATTATACTCGCTCAAGTTACCTCAACGATCTCGACCGGCACAAGAAGCTTGCCTTGGAGCAG
TGATACTTGAGTTGATTTTGACTGCCATCTTTTGTACATCATCATCANTATCAACATTGTGATCCTCCTCCTTTCCAAAG
GTGTAGTAGTATGCAGGCTGTATGGATGGATGTAAGGGTTCAGTTTATCAGTTGCTCCCTTTGTTGCTGAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis