Browse Element(s) Details


Os.34632.1.S1_at

Description gb:AK070688.1
DB_XREF= gi:32980712
TID=Os.34632.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34632 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Putative topoisomerase (OJ1743A09.9), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023057E15, full insert sequence.
FL= gb:AK070688.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1218011/11MA3 domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12130OsAffx.25066.1.S1_at11/113+6347606..6348043hypothetical protein
LOC_Os03g12140Os.49195.1.S1_at11/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12140Os.55846.1.S1_at1/113+6348567..6352819Glucan endo-1,3-beta-glucosidase 3 precursor, putative, expressed
LOC_Os03g12150Os.15087.1.S1_at11/113+6356529..6359358D-mannose binding lectin family protein, expressed
LOC_Os03g12160Os.16151.1.S1_at11/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12160Os.52160.1.S1_at1/113+6359518..6367753Leucine Rich Repeat family protein, expressed
LOC_Os03g12170OsAffx.3205.1.S1_at10/113+6369228..6370796hypothetical protein
LOC_Os03g12180Os.34632.1.S1_at11/113+6371926..6374593MA3 domain-containing protein, putative, expressed
LOC_Os03g12190OsAffx.22269.1.S1_at11/113+6375080..6376387F-box domain containing protein
LOC_Os03g12200OsAffx.22268.1.S1_at10/113+6377687..6380420F-box domain containing protein
LOC_Os03g12210Os.43888.1.S1_at9/113+6382350..6386001expressed protein
LOC_Os03g12220OsAffx.10056.1.S1_x_at11/113+6389686..6390687retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g12230Os.40419.1.S1_at11/113+6397103..6399515caleosin, putative, expressed
LOC_Os03g12230Os.48013.1.A1_at9/113+6397103..6399515caleosin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.34632.1.S1_at--147--5031Chr03:6372357..6372381 (25 bp)
GCAGTTATGCTGCTACGTCGAGCGC
LOC_Os03g12180
Os.34632.1.S1_at--1074--3251Chr03:6372297..6372321 (25 bp)
CAACGGTGTGCGCTCGTGAAGAACA
LOC_Os03g12180
Os.34632.1.S1_at--565--5491Chr03:6372277..6372301 (25 bp)
GAACACCCGGTTAATTTATATACAT
LOC_Os03g12180
Os.34632.1.S1_at--244--651Chr03:6372254..6372278 (25 bp)
ATGCAGATGCAGCACTGGCATTCCA
LOC_Os03g12180
Os.34632.1.S1_at--93--3591Chr03:6372221..6372245 (25 bp)
CATTTGCAACTTTACACAGCTATAT
LOC_Os03g12180
Os.34632.1.S1_at--144--231Chr03:6372200..6372224 (25 bp)
ATATACTACTTTGCATTCCGTTCCA
LOC_Os03g12180
Os.34632.1.S1_at--876--91Chr03:6372186..6372210 (25 bp)
ATTCCGTTCCATGTATGTATCAGCA
LOC_Os03g12180
Os.34632.1.S1_at--114--6431Chr03:6372105..6372129 (25 bp)
GATCTTCCATTTTAGCAGTTGCGCG
LOC_Os03g12180
Os.34632.1.S1_at--869--10791Chr03:6372006..6372030 (25 bp)
TTGTTTTGTGAATTGGCTGCTGAGA
LOC_Os03g12180
Os.34632.1.S1_at--1105--5971Chr03:6371985..6372009 (25 bp)
GAGAGAATTACCATGCTACACCTTG
LOC_Os03g12180
Os.34632.1.S1_at--99--4851Chr03:6371971..6371995 (25 bp)
GCTACACCTTGTTATCTTATCACAT
LOC_Os03g12180
Target Sequence 
GCAGTTATGCTGCTACGTCGAGCGCGCCAAGAAGGGTGGATGGCTGGACGCGTCCTTCCCCAACGGTGTGCGCTCGTGAA
GAACACCCGGTTAATTTATATACATGCAGATGCAGCACTGGCATTCCAGGGGATTTCATTTGCAACTTTACACAGCTATA
TACTACTTTGCATTCCGTTCCATGTATGTATCAGCAAAGGGAATATGACTAGCACAAGAAAGAAAATTGTTGTCATAGGA
TTAGGANNNNNNAGCTTTGATCTTCCATTTTAGCAGTTGCGCGGCGTTTAGCCCGGAGGATTTGNGCATTGAAGAGTTTG
TGTTGTTTTTAATATGATGTGAGAGTTTCTGTTGTTTTTGTTTTGTGAATTGGCTGCTGAGAGAATTACCATGCTACACC
TTGTTATCTTATCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.34632.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis