Browse Element(s) Details

Os.34643.1.S1_at

Description

gb:AK070659.1
DB_XREF= gi:32980683
TID=Os.34643.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34643 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (P0492E07.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058A09, full insert sequence.
FL= gb:AK070659.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os07g22570	11/11	retrotransposon protein, putative, unclassified, expressed
LOC_Os07g15510	1/11	retrotransposon protein, putative, Ty3-gypsy subclass

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os07g22534	Os.30694.3.S1_x_at	11/11	7	+	12674396..12682626	WD-repeat protein 18, putative, expressed
LOC_Os07g22534	Os.30694.1.S1_at	11/11	7	+	12674396..12682626	WD-repeat protein 18, putative, expressed
LOC_Os07g22534	Os.30694.2.S1_at	10/11	7	+	12674396..12682626	WD-repeat protein 18, putative, expressed
LOC_Os07g22534	OsAffx.22627.1.S1_at	10/11	7	+	12674396..12682626	WD-repeat protein 18, putative, expressed
LOC_Os07g22534	Os.7923.1.S1_x_at	6/11	7	+	12674396..12682626	WD-repeat protein 18, putative, expressed
LOC_Os07g22534	Os.32421.1.A1_at	1/11	7	+	12674396..12682626	WD-repeat protein 18, putative, expressed
LOC_Os07g22550	OsAffx.22699.1.S1_x_at	1/11	7	+	12685933..12692416	retrotransposon protein, putative, unclassified
LOC_Os07g22550	OsAffx.16111.1.S1_at	1/11	7	+	12685933..12692416	retrotransposon protein, putative, unclassified
LOC_Os07g22550	OsAffx.20615.1.S1_at	1/11	7	+	12685933..12692416	retrotransposon protein, putative, unclassified
LOC_Os07g22550	OsAffx.10039.1.S1_at	1/11	7	+	12685933..12692416	retrotransposon protein, putative, unclassified
LOC_Os07g22560	OsAffx.22250.2.S1_x_at	11/11	7	+	12692786..12695518	hypothetical protein
LOC_Os07g22570	Os.34643.1.S1_at	11/11	7	+	12697129..12698972	retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570	Os.29747.1.S1_s_at	4/11	7	+	12697129..12698972	retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22570	Os.29747.1.S1_at	1/11	7	+	12697129..12698972	retrotransposon protein, putative, unclassified, expressed
LOC_Os07g22580	Os.32592.1.S1_at	11/11	7	+	12703673..12706326	RhoGAP domain containing protein, expressed
LOC_Os07g22580	Os.51549.1.S1_at	1/11	7	+	12703673..12706326	RhoGAP domain containing protein, expressed
LOC_Os07g22590	OsAffx.16363.2.S1_at	11/11	7	+	12708674..12711669	hAT family dimerisation domain containing protein
LOC_Os07g22590	OsAffx.16363.1.S1_x_at	11/11	7	+	12708674..12711669	hAT family dimerisation domain containing protein
LOC_Os07g22590	OsAffx.16363.1.S1_at	11/11	7	+	12708674..12711669	hAT family dimerisation domain containing protein
LOC_Os07g22590	OsAffx.4116.1.S1_x_at	1/11	7	+	12708674..12711669	hAT family dimerisation domain containing protein
LOC_Os07g22600	Os.4599.1.S1_at	10/11	7	+	12714877..12721201	Spermidine synthase 1, putative, expressed
LOC_Os07g22610	Os.38395.3.S1_x_at	11/11	7	+	12721651..12728343	transposon protein, putative, Mutator sub-class
LOC_Os07g22610	Os.38395.2.S1_x_at	9/11	7	+	12721651..12728343	transposon protein, putative, Mutator sub-class
LOC_Os07g22610	Os.38395.4.S1_x_at	4/11	7	+	12721651..12728343	transposon protein, putative, Mutator sub-class
LOC_Os07g22610	Os.38395.1.S1_at	1/11	7	+	12721651..12728343	transposon protein, putative, Mutator sub-class
LOC_Os07g22610	Os.38395.5.S1_at	1/11	7	+	12721651..12728343	transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.34643.1.S1_at--176--443	1	Chr07:12697657..12697681 (25 bp)	GCCAGTGTGGGCAACAGCTTGATGA	LOC_Os07g22570
Os.34643.1.S1_at--1001--175	1	Chr07:12697605..12697629 (25 bp)	ACCTCCTAATAAACGTGCATCTGAT	LOC_Os07g22570
Os.34643.1.S1_at--532--733	1	Chr07:12697591..12697615 (25 bp)	GTGCATCTGATATAGTGGGTCCAAT	LOC_Os07g22570
Os.34643.1.S1_at--804--735	1	Chr07:12697520..12697544 (25 bp)	GTGAACGCTAACCTTGTGTTAACTA	LOC_Os07g22570
Os.34643.1.S1_at--949--797	2	Chr07:12697482..12697506 (25 bp)	GGATGAGCCTATGCTTTTGAGTACT	LOC_Os07g22570
Os.34643.1.S1_at--648--71	1	Chr07:12697411..12697435 (25 bp)	ATGATGATGGTTTCTACCCTCCAAA	LOC_Os07g22570
Os.34643.1.S1_at--185--293	2	Chr07:12697376..12697400 (25 bp)	AAGGAGCCTGGACGTGCATAGCAAA	LOC_Os07g22570
Os.34643.1.S1_at--256--133	2	Chr07:12697352..12697376 (25 bp)	AGAGGAACCATTCAGCTGCTATACA	LOC_Os07g22570
Os.34643.1.S1_at--768--277	1	Chr07:12697261..12697285 (25 bp)	AAGAGAGCTCCACTAGGCCATGAAT	LOC_Os07g22570
Os.34643.1.S1_at--253--655	1	Chr07:12697231..12697255 (25 bp)	GATTATTGTGACTTCCTACTGCATG	LOC_Os07g22570
Os.34643.1.S1_at--465--679	1	Chr07:12697195..12697219 (25 bp)	GTTTTTAAAGACTCCACTAGTGCTA	LOC_Os07g22570

Target Sequence

GCCAGTGTGGGCAACAGCTTGATGAGGACATCCCTAGCAGCCACTCTTCCCCACCTCCTAATAAACGTGCATCTGATATA
GTGGGTCCAATTACAAGGAGCAGAGCCAAACAATTAGAGAAGGAAATTCACTCTCAGGTGAACGCTAACCTTGTGTTAAC
TAATCAAATTACTTTGGATGAGCCTATGCTTTTGAGTACTTGTTTTAATGTTCTTAGGAATGATGGAGTGCACGAACGGA
CATGGGATGATGATGGTTTCTACCCTCCAAATATATGGACTAAGGAGCCTGGACGTGCATAGCAAAGAGGAACCATTCAG
CTGCTATACATAGTAAATAAAACCTTCAAATTGTTGTTTCGNANGNGNAGCTGCATGCAAATGAAGTCCAAACATCAAGA
GAGCTCCACTAGGCCATGAATGCAAGGATTATTGTGACTTCCTACTGCATGTTTTCATTTATGTTTTTAAAGACTCCACT
AGTGCTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis