Browse Element(s) Details

Os.34965.2.S1_s_at

Description

gb:AK066842.1
DB_XREF= gi:32976860
TID=Os.34965.2
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.34965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Hypothetical protein (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013084A11, full insert sequence.
FL= gb:AK066842.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g07130	11/11	Leucine Rich Repeat family protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g07090	Os.4210.1.S1_at	10/11	6	+	3375577..3385458	Adaptin N terminal region family protein, expressed
LOC_Os06g07090	Os.45879.1.S1_at	1/11	6	+	3375577..3385458	Adaptin N terminal region family protein, expressed
LOC_Os06g07100	Os.27183.1.S1_at	11/11	6	+	3387787..3389472	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g07110	Os.40855.5.S1_x_at	11/11	6	+	3395348..3400021	hypothetical protein
LOC_Os06g07110	Os.40360.1.S1_at	9/11	6	+	3395348..3400021	hypothetical protein
LOC_Os06g07110	Os.40360.1.S1_x_at	6/11	6	+	3395348..3400021	hypothetical protein
LOC_Os06g07120	Os.7478.1.S1_at	11/11	6	+	3404169..3406719	undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07120	Os.7478.2.S1_x_at	10/11	6	+	3404169..3406719	undecaprenyl diphosphate synthase family protein, expressed
LOC_Os06g07130	Os.34965.2.S1_s_at	11/11	6	+	3407661..3417592	Leucine Rich Repeat family protein, expressed
LOC_Os06g07130	Os.7011.1.S2_x_at	1/11	6	+	3407661..3417592	Leucine Rich Repeat family protein, expressed
LOC_Os06g07140	Os.4216.1.S1_a_at	11/11	6	+	3419508..3420519	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07140	Os.4216.2.S1_x_at	11/11	6	+	3419508..3420519	Proteasome subunit alpha type 4, putative, expressed
LOC_Os06g07150	OsAffx.22574.1.S1_at	8/11	6	+	3424691..3425038	hypothetical protein
LOC_Os06g07160	Os.33725.1.S1_at	11/11	6	+	3427705..3432478	metaxin, putative, expressed
LOC_Os06g07160	Os.51581.1.S1_at	1/11	6	+	3427705..3432478	metaxin, putative, expressed
LOC_Os06g07170	NA	NA	6	+	3432634..3433780	hypothetical protein
LOC_Os06g07180	OsAffx.27485.1.S1_at	10/11	6	+	3436575..3437625	expressed protein
LOC_Os06g07190	Os.49094.1.S1_at	8/11	6	+	3439121..3442076	expressed protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006468	biological_process	protein amino acid phosphorylation
GO:0007169	biological_process	transmembrane receptor protein tyrosine kinase signaling pathway
GO:0016020	cellular_component	membrane
GO:0004672	molecular_function	protein kinase activity
GO:0004674	molecular_function	protein serine/threonine kinase activity
GO:0005515	molecular_function	protein binding
GO:0005524	molecular_function	ATP binding
GO:0016301	molecular_function	kinase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.34965.2.S1_s_at--648--225	1	Chr06:3416864..3416888 (25 bp)	AAATACATCTCTACTGGAATGGGCG	LOC_Os06g07130
Os.34965.2.S1_s_at--1069--79	1	Chr06:3416882..3416906 (25 bp)	ATGGGCGAGGCACTTGCTGTATTCC	LOC_Os06g07130
Os.34965.2.S1_s_at--339--253	1	Chr06:3416916..3416940 (25 bp)	AACTTATGGTCCTCTGGTGTCAGCA	LOC_Os06g07130
Os.34965.2.S1_s_at--807--307	1	Chr06:3416940..3417065 (25 bp)	AATAAGAGTATTCCCTTCCGCGGAG	LOC_Os06g07130
Os.34965.2.S1_s_at--959--1073	1	Chr06:3417130..3417154 (25 bp)	TTGCAGGAATTGCTGCTCTTTCCAT	LOC_Os06g07130
Os.34965.2.S1_s_at--995--481	1	Chr06:3417144..3417168 (25 bp)	GCTCTTTCCATAGCTGCTACAGTGA	LOC_Os06g07130
Os.34965.2.S1_s_at--77--967	1	Chr06:3417177..3417201 (25 bp)	TCAGCTGTCTACCTCTGGTGGAAAT	LOC_Os06g07130
Os.34965.2.S1_s_at--568--499	1	Chr06:3417294..3417318 (25 bp)	GCATGTTCATGAGCCTATGTCTGTA	LOC_Os06g07130
Os.34965.2.S1_s_at--111--751	1	Chr06:3417416..3417440 (25 bp)	GTGGTCATGATTTTTAGCCTATAGT	LOC_Os06g07130
Os.34965.2.S1_s_at--608--121	1	Chr06:3417438..3417462 (25 bp)	AGTTTTGTTGCTCTACCATCATTTA	LOC_Os06g07130
Os.34965.2.S1_s_at--924--29	1	Chr06:3417462..3417486 (25 bp)	ATAGCCAGGGTGTAATCTCAAGTTA	LOC_Os06g07130

Target Sequence

AAATACATCTCTACTGGAATGGGCGAGGCACTTGCTGTATTCCACGCAATGGAACTTATGGTCCTCTGGTGTCAGCAATA
AGAGTATTCCCTTCCGCGGAGACGCAAGCCAGCCCCCCTNCTGTGGCGCTTACATCAAGGCACGATGAAAAGCGAAGAGG
AGTGGTTGCAGGAATTGCTGCTCTTTCCATAGCTGCTACAGTGATATCTTCATCAGCTGTCTACCTCTGGTGGAAATGGG
TTTCACTTGTGAAGCATCGAAAGGCATGAGGTGTTCAGATGTGCATATACAAAGCTGGTTGTTTTAATTTTGTTCCTTCT
GTCTTCTTAGCATGTTCATGAGCCTATGTCTGTATTGTATGGGCATTGAGCTGGGTTTACATGAGCTGTACAGGAAAAGG
TACTGTGTAACGTCAAGAGGAAAGCAACAATATTGATGTACAGTTTGGTTTGTGGTCATGATTTTTAGCCTATAGTTTTG
TTGCTCTACCATCATTTATAGCCAGGGTGTAATCTCAAGTTA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis