Browse Element(s) Details


Os.35149.1.S1_at

Description gb:AK068791.1
DB_XREF= gi:32978816
TID=Os.35149.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35149 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative permease 1 (P0683F02.8), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013164P20, full insert sequence.
FL= gb:AK068791.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6387011/11xanthine/uracil permease family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63830OsAffx.23907.1.S1_at10/111+37361249..37362498Dehydrodolichyl diphosphate synthase 2, putative, expressed
LOC_Os01g63840Os.38338.1.S1_x_at10/111+37366416..373700603-deoxy-D-manno-octulosonic-acid transferase family protein, expressed
LOC_Os01g63854OsAffx.11717.1.S1_s_at11/111+37370345..37376740expressed protein
LOC_Os01g63854Os.4919.1.S1_at11/111+37370345..37376740expressed protein
LOC_Os01g63870Os.35149.1.S1_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.35149.2.S1_x_at11/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63870Os.57399.1.S1_at1/111+37387449..37391464xanthine/uracil permease family protein, putative, expressed
LOC_Os01g63880Os.9790.2.S1_x_at10/111+37392500..37395745expressed protein
LOC_Os01g63890Os.3537.1.S1_at11/111+37396270..37398738G10 protein homolog, putative, expressed
LOC_Os01g63900Os.46280.1.A1_at11/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63900Os.20081.1.S1_x_at10/111+37403342..37406387DNA excision repair protein ERCC-8, putative, expressed
LOC_Os01g63910Os.46440.1.A1_s_at11/111+37407138..37415781AT hook motif family protein, expressed
LOC_Os01g63910Os.27347.3.S1_at5/111+37407138..37415781AT hook motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0015646molecular_functionpermease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35149.1.S1_at--550--4031Chr01:37391099..37391123 (25 bp)
CGTTGGCCTATAGCACAGTTTTGGT
LOC_Os01g63870
Os.35149.1.S1_at--632--8731Chr01:37391130..37391154 (25 bp)
TGTAGCCTTGGCCAACTGCACAAAA
LOC_Os01g63870
Os.35149.1.S1_at--568--2411Chr01:37391151..37391175 (25 bp)
AAAAAATATTCTGCAGCTTCCAAGA
LOC_Os01g63870
Os.35149.1.S1_at--135--7891Chr01:37391185..37391209 (25 bp)
GGTTACTGTGCAAAATCTCAGGCGA
LOC_Os01g63870
Os.35149.1.S1_at--569--671Chr01:37391232..37391256 (25 bp)
ATGACCGACTGTTTCCCAATGTTTT
LOC_Os01g63870
Os.35149.1.S1_at--123--7031Chr01:37391282..37391306 (25 bp)
GTACATACTGAATTGCTCTCTAGGT
LOC_Os01g63870
Os.35149.1.S1_at--17--4811Chr01:37391296..37391320 (25 bp)
GCTCTCTAGGTTAGTTGTCTTGTCC
LOC_Os01g63870
Os.35149.1.S1_at--145--8711Chr01:37391311..37391335 (25 bp)
TGTCTTGTCCTGATGCAGATGCTAG
LOC_Os01g63870
Os.35149.1.S1_at--241--8131Chr01:37391364..37391388 (25 bp)
GGACTACCTTTTGTCATCACTTACA
LOC_Os01g63870
Os.35149.1.S1_at--437--10671Chr01:37391393..37391417 (25 bp)
TTGCTCTTCTCCTGGTACTATTTAA
LOC_Os01g63870
Os.35149.1.S1_at--194--7931Chr01:37391428..37391452 (25 bp)
GGATATCTATTTGTACAGGCGGTAA
LOC_Os01g63870
Target Sequence 
CGTTGGCCTATAGCACAGTTTTGGTGTGGTTTGTAGCCTTGGCCAACTGCACAAAAAATATTCTGCAGCTTCCAAGAATG
AAAAATGGTTACTGTGCAAAATCTCAGGCGAAAGAAATGGTTAGTCACGAATCATGACCGACTGTTTCCCAATGTTTTTC
AACCAAGGTATCGACTATCGAGTGTACATACTGAATTGCTCTCTAGGTTAGTTGTCTTGTCCTGATGCAGATGCTAGATG
CATCAGGGGCTTCCCACATTTTTTTGGACTACCTTTTGTCATCACTTACAGATTTTGCTCTTCTCCTGGTACTATTTAAT
TGGTGTTAGGGATATCTATTTGTACAGGCGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35149.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis