Browse Element(s) Details


Os.35590.2.S1_at

Description gb:AK120414.1
DB_XREF= gi:37990037
TID=Os.35590.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35590 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein~similar to Arabidopsis thaliana chromosome 3, At3g06920 (P0021G06.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013092H05, full insert sequence.
FL= gb:AK120414.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1453011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g14490OsAffx.30223.2.S1_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14490OsAffx.30223.1.S1_s_at11/117+8254014..8256556Protein kinase domain containing protein
LOC_Os07g14500OsAffx.30223.1.S1_at11/117+8257378..8258557hypothetical protein
LOC_Os07g14514Os.38884.2.S1_x_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.27723.1.S1_a_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38884.1.S1_at11/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14514Os.38157.1.S1_s_at1/117+8263135..8277231retrotransposon protein, putative, unclassified, expressed
LOC_Os07g14530Os.35590.2.S1_at11/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.3.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14530Os.35590.1.S1_x_at10/117+8280193..8284586pentatricopeptide, putative, expressed
LOC_Os07g14540Os.8775.1.S1_at11/117+8286140..8289457Vesicle-associated membrane protein 724, putative, expressed
LOC_Os07g14549NANA7+8291920..8292728NA
LOC_Os07g14560OsAffx.21161.1.S1_at1/117+8301301..8305674retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g14570OsAffx.31069.1.S1_x_at10/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.4.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.1.S1_at9/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_at5/117+8306602..8311006hypothetical protein
LOC_Os07g14570Os.53479.1.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.31069.5.S1_x_at3/117+8306602..8311006hypothetical protein
LOC_Os07g14570OsAffx.14745.1.S1_at2/117+8306602..8311006hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35590.2.S1_at--948--3711Chr07:8280775..8280799 (25 bp)
CTACCTTATTCAGTCATTTGGTTTG
LOC_Os07g14530
Os.35590.2.S1_at--959--1151Chr07:8280736..8280760 (25 bp)
AGTCTAGTACTATTCATATGCCTGC
LOC_Os07g14530
Os.35590.2.S1_at--1069--1171Chr07:8280731..8280755 (25 bp)
AGTACTATTCATATGCCTGCATCTC
LOC_Os07g14530
Os.35590.2.S1_at--631--3571Chr07:8280722..8280746 (25 bp)
CATATGCCTGCATCTCTAGTTGAAA
LOC_Os07g14530
Os.35590.2.S1_at--1118--10131Chr07:8280720..8280744 (25 bp)
TATGCCTGCATCTCTAGTTGAAAAT
LOC_Os07g14530
Os.35590.2.S1_at--302--10111Chr07:8280693..8280717 (25 bp)
TATGGTCAAATGGAAATTTCATCTC
LOC_Os07g14530
Os.35590.2.S1_at--374--8151Chr07:8280682..8280706 (25 bp)
GGAAATTTCATCTCAACATTTATCT
LOC_Os07g14530
Os.35590.2.S1_at--746--3551Chr07:8280674..8280698 (25 bp)
CATCTCAACATTTATCTTACTTACA
LOC_Os07g14530
Os.35590.2.S1_at--748--9551Chr07:8280660..8280684 (25 bp)
TCTTACTTACATTTCTTTCCAGGCG
LOC_Os07g14530
Os.35590.2.S1_at--198--9871Chr07:8280657..8280681 (25 bp)
TACTTACATTTCTTTCCAGGCGGGT
LOC_Os07g14530
Os.35590.2.S1_at--88--2051Chr07:8280652..8280676 (25 bp)
ACATTTCTTTCCAGGCGGGTTGGCT
LOC_Os07g14530
Target Sequence 
CTACCTTATTCAGTCATTTGGTTTGATTTTGATATAGAAAGTCTAGTACTATTCATATGCCTGCATCTCTAGTTGAAAAT
AATATGGTCAAATGGAAATTTCATCTCAACATTTATCTTACTTACATTTCTTTCCAGGCGGGTTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35590.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis