Browse Element(s) Details


Os.35642.2.S1_x_at

Description gb:NM_190892.1
DB_XREF= gi:34908867
GEN=P0699H05.6
TID=Os.35642.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.35642 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative subtilase (P0699H05.6), mRNA.
PROD=putative subtilase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5828011/11Subtilisin N-terminal Region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58230OsAffx.25270.2.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.5723.1.S1_x_at4/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.25270.2.S1_at3/111+33982822..33985050hypothetical protein
LOC_Os01g58230OsAffx.1248.1.S1_x_at1/111+33982822..33985050hypothetical protein
LOC_Os01g58240Os.30258.1.S1_at11/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58240Os.30258.2.S1_x_at10/111+33986630..33990388Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.5242.1.S1_at11/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58260Os.30258.2.S1_x_at1/111+33994877..33999386Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58270OsAffx.23836.1.S1_at11/111+34001253..34006565Subtilisin N-terminal Region family protein
LOC_Os01g58280Os.35642.2.S1_x_at11/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.48715.1.A1_x_at4/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58280Os.5139.2.S1_x_at1/111+34010031..34015042Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.5.S1_x_at11/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58290Os.28433.4.A1_at10/111+34018642..34023374Subtilisin N-terminal Region family protein, expressed
LOC_Os01g58300OsAffx.26617.1.S1_at10/111+34023403..34024850hypothetical protein
LOC_Os01g58300OsAffx.26617.4.S1_x_at4/111+34023403..34024850hypothetical protein
LOC_Os01g58310Os.28798.1.S1_at11/111+34025976..34026530expressed protein
LOC_Os01g58310Os.42298.1.S1_x_at3/111+34025976..34026530expressed protein
LOC_Os01g58320Os.10196.1.S1_at9/111+34030250..34030708expressed protein
LOC_Os01g58320Os.42299.1.S1_x_at3/111+34030250..34030708expressed protein
LOC_Os01g58330OsAffx.23837.1.S1_at10/111+34031809..34032977hypothetical protein
LOC_Os01g58330Os.6.2.S1_at2/111+34031809..34032977hypothetical protein
LOC_Os01g58340NANA1+34037035..34038059hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004289molecular_functionsubtilase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35642.2.S1_x_at--381--9771Chr01:34014298..34014322 (25 bp)
TAAGGCTCTACATCCTCATTGGTCT
LOC_Os01g58280
Os.35642.2.S1_x_at--724--31Chr01:34014315..34014339 (25 bp)
ATTGGTCTCATGCTGCTCTCAAATC
LOC_Os01g58280
Os.35642.2.S1_x_at--854--10011Chr01:34014477..34014501 (25 bp)
TAGCAGAAGCGCTTCCTCGGAAAGT
LOC_Os01g58280
Os.35642.2.S1_x_at--186--1611Chr01:34014547..34014571 (25 bp)
AGCTGCTGATCCTGGCCTAATTTAT
LOC_Os01g58280
Os.35642.2.S1_x_at--500--7051Chr01:34014633..34014657 (25 bp)
GTAACATTACGACATTGCCAGCCTA
LOC_Os01g58280
Os.35642.2.S1_x_at--476--10171Chr01:34014656..34014680 (25 bp)
TATCACCTGAATCTGCCTTCTATAT
LOC_Os01g58280
Os.35642.2.S1_x_at--905--611Chr01:34014744..34014768 (25 bp)
ATGCGGTTTACCAATCCTCTATAGA
LOC_Os01g58280
Os.35642.2.S1_x_at--587--8991Chr01:34014783..34014807 (25 bp)
TGAAGATGACTATCGAACCGCCTGT
LOC_Os01g58280
Os.35642.2.S1_x_at--701--2811Chr01:34014845..34014869 (25 bp)
AAGATTTGCATTACACCTCTGTGGA
LOC_Os01g58280
Os.35642.2.S1_x_at--478--111Chr01:34014889..34014913 (25 bp)
ATTCGGCAGCCTAACTTGGTACAAT
LOC_Os01g58280
Os.35642.2.S1_x_at--922--1431Chr01:34014929..34014953 (25 bp)
AGAATCCCAATTGCTGTCCGGATCA
LOC_Os01g58280
Target Sequence 
TAAGGCTCTACATCCTCATTGGTCTCATGCTGCTCTCAAATCAGCAATTGTCACCACAGCATCAACAAAGGACGAATATG
ACACGCCGATATTAGCAGAAGCGCTTCCTCGGAAAGTTGCTGACCCTTTCGATTATGGAGGAGGGAACATAAATCCTATT
GGAGCTGCTGATCCTGGCCTAATTTATGACATCGATCCAAAGGATTACAACAAATTCTTCGCTTGTCAGATCAAGAAATA
TGAGATCTGTAACATTACGACATTGCCAGCCTATCACCTGAATCTGCCTTCTATATCTATACCAGACCTAAGGCATCCAA
TAAACGTACGACGAGCAGTCACTAATGTCGGGGAGGTGGATGCGGTTTACCAATCCTCTATAGAATCCCCCCTTGGAGTG
AAGATGACTATCGAACCGCCTGTCCTAGTCTTCAATGCTAGCAAGAAAGTGCATGCCTTCAAGATTTGCATTACACCTCT
GTGGAAAGTGCAGGGAGGCTACACATTCGGCAGCCTAACTTGGTACAATGAGCACCACACTGCAAGAATCCCAATTGCTG
TCCGGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35642.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis