Browse Element(s) Details


Os.35890.1.S1_at

Description gb:AK065338.1
DB_XREF= gi:32975356
TID=Os.35890.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.35890 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative fructokinase (P0529H11.20), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000K08, full insert sequence.
FL= gb:AK065338.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6322011/11pfkB-type carbohydrate kinase family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g63180Os.42421.1.S1_at11/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63180Os.18847.1.S1_at6/111+36943980..36948365Multicopper oxidase family protein, expressed
LOC_Os01g63190Os.14830.1.S1_a_at11/111+36949678..36954511Multicopper oxidase family protein, expressed
LOC_Os01g63200Os.42420.1.S1_at11/111+36961180..36963829Multicopper oxidase family protein, expressed
LOC_Os01g63210Os.11253.1.S1_at11/111+36966475..36967417SOUL heme-binding family protein, putative, expressed
LOC_Os01g63220Os.35890.1.S1_at11/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63220OsAffx.23899.1.S1_at10/111+36967792..36973322pfkB-type carbohydrate kinase family protein, putative, expressed
LOC_Os01g63230Os.7203.2.S1_x_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63230Os.7203.1.S1_at11/111+36970430..36974856Plant protein family protein, expressed
LOC_Os01g63240Os.45898.1.S1_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.45898.1.S1_x_at11/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63240Os.12944.1.S1_at10/111+36979336..36981573Reticulon family protein, expressed
LOC_Os01g63250Os.7799.1.S1_at11/111+36983359..36987578Machado-Joseph disease, putative, expressed
LOC_Os01g63260Os.33215.1.S1_at11/111+36993814..369949853-oxo-5-alpha-steroid 4-dehydrogenase family protein, expressed
LOC_Os01g63270Os.2623.1.S1_at11/111+36997170..37003327Alpha-glucan phosphorylase, H isozyme, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.35890.1.S1_at--1142--2111Chr01:36969921..36969945 (25 bp)
ACAGGCTTTTCAGGTATCATCCTAT
LOC_Os01g63220
Os.35890.1.S1_at--1119--10531Chr01:36969929..36969953 (25 bp)
TTCAGGTATCATCCTATCGTCCGTT
LOC_Os01g63220
Os.35890.1.S1_at--78--10151Chr01:36969943..36969967 (25 bp)
TATCGTCCGTTCCATATTGTTTCAG
LOC_Os01g63220
Os.35890.1.S1_at--65--4011Chr01:36969946..36969970 (25 bp)
CGTCCGTTCCATATTGTTTCAGTGT
LOC_Os01g63220
Os.35890.1.S1_at--456--9631Chr01:36969964..36969988 (25 bp)
TCAGTGTTCAGTTTTAGTTGGAAAA
LOC_Os01g63220
Os.35890.1.S1_at--1105--6611Chr01:36969980..36970004 (25 bp)
GTTGGAAAAATGTGTCTGCCACTTG
LOC_Os01g63220
Os.35890.1.S1_at--440--2291Chr01:36969987..36970011 (25 bp)
AAATGTGTCTGCCACTTGGAGGCTT
LOC_Os01g63220
Os.35890.1.S1_at--456--2071Chr01:36970000..36970024 (25 bp)
ACTTGGAGGCTTCCATTGCTTTACA
LOC_Os01g63220
Os.35890.1.S1_at--72--6191Chr01:36970005..36970029 (25 bp)
GAGGCTTCCATTGCTTTACAGTTTT
LOC_Os01g63220
Os.35890.1.S1_at--1118--4311Chr01:36970012..36970036 (25 bp)
CCATTGCTTTACAGTTTTGAAGAGC
LOC_Os01g63220
Os.35890.1.S1_at--330--10231Chr01:36970027..36970051 (25 bp)
TTTGAAGAGCTATGTTTACCTATTG
LOC_Os01g63220
Target Sequence 
ACAGGCTTTTCAGGTATCATCCTATCGTCCGTTCCATATTGTTTCAGTGTTCAGTTTTAGTTGGAAAAATGTGTCTGCCA
CTTGGAGGCTTCCATTGCTTTACAGTTTTGAAGAGCTATGTTTACCTATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.35890.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis