Browse Element(s) Details


Os.36328.1.S1_at

Description gb:AK063681.1
DB_XREF= gi:32973699
TID=Os.36328.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.36328 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative 16.9 kDa heat shock protein (OSJNBa0083M16.34), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-119-E07, full insert sequence.
FL= gb:AK063681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0434011/1116.9 kDa class I heat shock protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04290Os.36438.1.S1_at5/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04290OsAffx.14829.2.S1_x_at1/111+1903780..1906469endo-1,4-beta-xylanase, putative
LOC_Os01g04300Os.6014.2.S1_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300Os.6014.2.S1_x_at11/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04300OsAffx.14829.2.S1_x_at1/111+1909419..1911877endo-1,4-beta-xylanase, putative, expressed
LOC_Os01g04310NANA1+1916551..1917233transposon protein, putative, unclassified
LOC_Os01g04320OsAffx.10903.2.S1_at11/111+1922127..1923305transposon protein, putative, unclassified
LOC_Os01g04330Os.36767.1.S1_at11/111+1927818..1928706EF hand family protein, expressed
LOC_Os01g04340Os.36328.1.S1_at11/111+1930919..193172616.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04350Os.14405.1.S1_at11/111+1937814..1938713Hsp20/alpha crystallin family protein, expressed
LOC_Os01g04360OsAffx.10905.3.S1_at11/111+1941063..194181316.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04370Os.4775.2.S1_at11/111+1945553..194638916.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.4775.1.S1_at11/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04380Os.57467.1.S1_x_at1/111+1948732..194948516.9 kDa class I heat shock protein, putative, expressed
LOC_Os01g04390Os.51285.1.S1_at11/111+1951950..1952727expressed protein
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
GO:0009408biological_processresponse to heat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36328.1.S1_at--140--4351Chr01:1931402..1931426 (25 bp)
CCAGGTGAGCGCGTCCATGGACAAT
LOC_Os01g04340
Os.36328.1.S1_at--187--1451Chr01:1931464..1931488 (25 bp)
AGAAGCCGCAGCTGAAGGCTATCCC
LOC_Os01g04340
Os.36328.1.S1_at--1028--451Chr01:1931490..1931514 (25 bp)
ATCTCGGGCTGATCATATCACCGTC
LOC_Os01g04340
Os.36328.1.S1_at--252--251Chr01:1931504..1931528 (25 bp)
ATATCACCGTCCGTGTTCGGCTGTT
LOC_Os01g04340
Os.36328.1.S1_at--107--7431Chr01:1931516..1931540 (25 bp)
GTGTTCGGCTGTTTGCTGCGTGCAT
LOC_Os01g04340
Os.36328.1.S1_at--815--4771Chr01:1931530..1931554 (25 bp)
GCTGCGTGCATTTGGCATGATCACA
LOC_Os01g04340
Os.36328.1.S1_at--451--3171Chr01:1931602..1931626 (25 bp)
AATTGTCATATGTAGCCCGTACGTA
LOC_Os01g04340
Os.36328.1.S1_at--949--6991Chr01:1931620..1931644 (25 bp)
GTACGTACGTGTCGCTCGTGTGTAT
LOC_Os01g04340
Os.36328.1.S1_at--436--3791Chr01:1931634..1931658 (25 bp)
CTCGTGTGTATGCATGTGTGTACTA
LOC_Os01g04340
Os.36328.1.S1_at--595--6991Chr01:1931662..1931686 (25 bp)
GTACGCACTACGTGTGTTACAGTAT
LOC_Os01g04340
Os.36328.1.S1_at--125--5471Chr01:1931688..1931712 (25 bp)
GAACTGTCTTAATTTGTCGTTGATG
LOC_Os01g04340
Target Sequence 
CCAGGTGAGCGCGTCCATGGACAATGGGGTGCTCACGGTCACCGTGCCCAAGGAGGAGACCAAGAAGCCGCAGCTGAAGG
CTATCCCCATCTCGGGCTGATCATATCACCGTCCGTGTTCGGCTGTTTGCTGCGTGCATTTGGCATGATCACAAGGATAT
GCCAATAATAAACTGTGTTTCAAGCAAGGGAAAATAATATAATTGTCATATGTAGCCCGTACGTACGTGTCGCTCGTGTG
TATGCATGTGTGTACTAGTAGTACGCACTACGTGTGTTACAGTATTGAACTGTCTTAATTTGTCGTTGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36328.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis