Browse Element(s) Details


Os.36351.1.S1_at

Description gb:AK063623.1
DB_XREF= gi:32973641
TID=Os.36351.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.36351 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-118-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-E09, full insert sequence.
FL= gb:AK063623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3428010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g34220NANA3+19443131..19445601retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34230OsAffx.13184.1.S1_at11/113+19447164..19447988hypothetical protein
LOC_Os03g34230OsAffx.17410.1.S1_x_at1/113+19447164..19447988hypothetical protein
LOC_Os03g34240NANA3+19450461..19453301retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34250NANA3+19453712..19455966retrotransposon protein, putative, unclassified
LOC_Os03g34260Os.1709.1.S1_x_at6/113+19458427..19460569retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34270OsAffx.13843.1.S1_at1/113+19461429..19464738hypothetical protein
LOC_Os03g34280Os.36351.1.S1_at10/113+19466301..19470237expressed protein
LOC_Os03g34290OsAffx.13185.1.S1_at11/113+19471133..19472273retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g34300Os.27680.1.S1_at11/113+19473524..19480531TMS membrane family protein, putative, expressed
LOC_Os03g34310Os.22470.2.S1_x_at11/113+19482712..19486344expressed protein
LOC_Os03g34310Os.22470.1.A1_at11/113+19482712..19486344expressed protein
LOC_Os03g34320OsAffx.28472.1.S1_x_at11/113+19490053..19492213hypothetical protein
LOC_Os03g34320Os.50810.2.S1_at1/113+19490053..19492213hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.36351.1.S1_at--842--8251Chr03:19466753..19466777 (25 bp)
GGCAGCTCAGTGTTGGTCCCGTGCC
LOC_Os03g34280
Os.36351.1.S1_at--1027--3451Chr03:19466793..19466817 (25 bp)
CAGTGCAGGGCCAAGCTTTGAGAGA
LOC_Os03g34280
Os.36351.1.S1_at--789--3231NONE
CAAGCTTTGAGAGAGTTACTACATC
NONE
Os.36351.1.S1_at--997--6971Chr03:19467838..19467862 (25 bp)
GTACCTAAACTTATGTTTGGCAACA
LOC_Os03g34280
Os.36351.1.S1_at--467--8971Chr03:19467884..19467908 (25 bp)
TGAAACAATCAATACCGCGCTGCAA
LOC_Os03g34280
Os.36351.1.S1_at--11--9971Chr03:19467896..19467920 (25 bp)
TACCGCGCTGCAACTAACGAGAAAA
LOC_Os03g34280
Os.36351.1.S1_at--543--1311Chr03:19467985..19468009 (25 bp)
AGATGTAGAGCATCCTTGCTCAAAA
LOC_Os03g34280
Os.36351.1.S1_at--730--8031Chr03:19469981..19470005 (25 bp)
GGAGATAGCTTACTCAATTGTAAAC
LOC_Os03g34280
Os.36351.1.S1_at--430--6331Chr03:19470054..19470078 (25 bp)
GATGCAGCTTAGTGTATGAAGTCCA
LOC_Os03g34280
Os.36351.1.S1_at--146--1211Chr03:19470164..19470188 (25 bp)
AGTTTGTGATTTGGGTATGCTTTTT
LOC_Os03g34280
Os.36351.1.S1_at--1051--7671Chr03:19470213..19470237 (25 bp)
GGGTATGAAACCCTAGACCTTCTCT
LOC_Os03g34280
Target Sequence 
GGCAGCTCAGTGTTGGTCCCGTGCCCGTCCGGAGCCCCGTCAGTGCAGGGCCAAGCTTTGAGAGAGTTACTACATCTAGA
GAGGAATCAGGGAAAACTAAGTGAATACAAAACTAGGATGGTTAGACTAAAGCCAAAGGTACCTAAACTTATGTTTGGCA
ACATTGATAAGGGTTAACAAGTAATGAAACAATCAATACCGCGCTGCAACTAACGAGAAAAACTGAAAACCGGAAGAGAG
TAGTACAACATGGAAGAAGAGAGATTTGAGAGAAGATTATGTAGAAGATGTAGAGCATCCTTGCTCAAAAAAGTGCAAAA
ATGTTAGAAAAGGAGATAGCTTACTCAATTGTAAACATCCGAACTAAAATTCATTTTAGGGACTCAAAGAAAGAGAAAAA
GGAAGATGCAGCTTAGTGTATGAAGTCCAATTTGAGGGGTTGTTTGTGGTTTTTTTTTTTTCAAGAATTCATCACAGATC
TATGAATTTGTGGGGAATATAAGCTTACATGTGAAGTTTGTGATTTGGGTATGCTTTTTTTGATGGACCTCAAATTTGAA
TTTGGGTATGAAACCCTAGACCTTCTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.36351.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis