Browse Element(s) Details


Os.3640.1.S1_at

Description gb:AK063827.1
DB_XREF= gi:32973845
TID=Os.3640.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3640 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-A10, full insert sequence.
FL= gb:AK103163.1 gb:AK063827.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1335011/1125.3 kDa vesicle transport protein, putative, expressed
LOC_Os08g215807/1125.3 kDa vesicle transport protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13300Os.54636.1.S1_at11/111+7414105..7419317B3 DNA binding domain containing protein, expressed
LOC_Os01g13310OsAffx.22073.1.S1_at11/111+7421086..7424444DNA topoisomerase 2, putative
LOC_Os01g13320Os.46008.1.S1_at4/111+7426186..7428137Pectinesterase family protein, expressed
LOC_Os01g13330NANA1+7428736..7429804hypothetical protein
LOC_Os01g13340Os.55881.1.S1_at11/111+7434671..7435690Harpin-induced protein 1 containing protein, expressed
LOC_Os01g13350Os.3640.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.23224.1.S1_at11/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13350OsAffx.25746.1.S1_x_at1/111+7435664..744002425.3 kDa vesicle transport protein, putative, expressed
LOC_Os01g13360Os.15937.1.S1_at11/111+7440488..7442924Phosphatidylinositol 3- and 4-kinase family protein, expressed
LOC_Os01g13370Os.6809.2.S1_x_at11/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13370Os.6809.1.S1_at10/111+7447643..7450485Ubiquitin ligase SINAT3, putative, expressed
LOC_Os01g13380OsAffx.11032.1.S1_at11/111+7452458..7452892hypothetical protein
LOC_Os01g13390Os.10003.1.S1_at11/111+7454671..7456760expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_s_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.3.S1_x_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.1.S1_at11/111+7457152..7462336expressed protein
LOC_Os01g13404Os.19005.2.S1_at10/111+7457152..7462336expressed protein
LOC_Os01g13404OsAffx.11033.1.S1_at10/111+7457152..7462336expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016192biological_processvesicle-mediated transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3640.1.S1_at--182--1192Chr08:12844447..12844471 (25 bp)
AGTAGTAGTGTAGCTCTTCTTCCGT
LOC_Os08g21580
Os.3640.1.S1_at--546--10272Chr08:12844483..12844507 (25 bp)
TTTGCCTATTCCTCCCAACAAAGAT
LOC_Os08g21580
Os.3640.1.S1_at--958--10791Chr01:7436137..7436161 (25 bp)
TTGTAGTATAAACCCTCGTCATCGA
LOC_Os01g13350
Os.3640.1.S1_at--832--5811Chr01:7436114..7436138 (25 bp)
GACCCAGCCTATCCTGATGGATGAA
LOC_Os01g13350
Os.3640.1.S1_at--203--9792Chr08:12844617..12844641 (25 bp)
TAGAGTCGGCTTTTCGACCTCCGAA
LOC_Os08g21580
Os.3640.1.S1_at--38--1612Chr08:12844722..12844746 (25 bp)
AGCTGCATGGAATGTCTTGTGACTC
LOC_Os08g21580
Os.3640.1.S1_at--602--7372Chr08:12844740..12844764 (25 bp)
GTGACTCAGACGTTTTAGCTGCAAT
LOC_Os08g21580
Os.3640.1.S1_at--211--4632Chr08:12844757..12844781 (25 bp)
GCTGCAATCGAATACGTCCGGTTAT
LOC_Os08g21580
Os.3640.1.S1_at--514--5232Chr08:12844766..12844790 (25 bp)
GAATACGTCCGGTTATGCTGCTGGA
LOC_Os08g21580
Os.3640.1.S1_at--514--2871Chr01:7435776..7435800 (25 bp)
AAGGGCCTATTTGTCTTGAGCTCAA
LOC_Os01g13350
Os.3640.1.S1_at--111--1571Chr01:7435665..7435689 (25 bp)
AGCTAAAATGCTACTGATACTCTGG
LOC_Os01g13350
Target Sequence 
AGTAGTAGTGTAGCTCTTCTTCCGTGCTTTTNGTTTTTTGNTTTTTTGNTTTTTGCCTATTCCTCCCAACAAAGATCATC
CNAAACTAAACCCATTGTAGTATAAACCCTCGTCATCGACCCAGCCTATCCTGATGGATGAAGAAGTCCTTGAGTTCTTN
NAGCACCGNTTTCTGGCTAATTGNTGTGTAGAGTCGGCTTTTCGACCTCCGAAATGGTATATGTTCTTTGCAANCTCACC
ATGTAAGAATTGATGTTTCAGGCTGATGGATGGACAAGGCNCATACCATCCAAAGCTGCATGGAATGTCTTGTGACTCAG
ACGTTTTAGCTGCAATCGAATACGTCCGGTTATGCTGCTGGANAAAGGTCATTCTCATTGCCAGATTATCAGCTTCTGTA
GTCAGAGATTTTGGCATGCAGTGCAACAACTTGAGATAGAACAACGTTAAGTATGAAGGGCCTATTTGTCTTGAGCTCAA
ATGCTATGCTAAATATGATATTTTTTACATGCAACAACTTGAGATTATCTTGATGTAGAACATGAACAACCTTGATGATA
CCTTTGAGCTAAAATGCTACTGATACTCTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis