Browse Element(s) Details


Os.37638.1.S1_at

Description gb:AK067384.1
DB_XREF= gi:32977402
TID=Os.37638.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.37638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) Unknown protein (OSJNBa0081P02.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013102E15, full insert sequence.
FL= gb:AK067384.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1243011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12370Os.40020.1.S1_a_at11/113+6516688..6520514HSF-type DNA-binding domain containing protein, expressed
LOC_Os03g12380OsAffx.3208.1.S1_at11/113+6520726..6521028hypothetical protein
LOC_Os03g12390Os.16872.1.S1_at11/113+6524266..6525593Protein kinase domain containing protein, expressed
LOC_Os03g12400NANA3+6526482..6526790transposon protein, putative, unclassified
LOC_Os03g12414Os.33798.2.S1_x_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414Os.33798.1.S1_at11/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12414OsAffx.4970.1.S1_at1/113+6535504..6541140Cyclin, N-terminal domain containing protein, expressed
LOC_Os03g12430Os.37638.1.S1_at11/113+6542507..6544334pentatricopeptide, putative, expressed
LOC_Os03g12440OsAffx.22281.1.S1_at11/113+6545264..6549318hypothetical protein
LOC_Os03g12450Os.7298.3.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.1.S1_x_at11/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12450Os.7298.2.S1_at10/113+6552354..6559733Nup133 nucleoporin family protein, expressed
LOC_Os03g12460Os.15503.1.A1_at10/113+6566316..6566901expressed protein
LOC_Os03g12460Os.43918.1.S1_at1/113+6566316..6566901expressed protein
LOC_Os03g12470Os.33121.1.S1_at11/113+6568899..6573152WAK-like kinase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37638.1.S1_at--515--7711Chr03:6543078..6543102 (25 bp)
GGGTGCTCTGTGACACTGATGTCTA
LOC_Os03g12430
Os.37638.1.S1_at--655--3571Chr03:6542966..6542990 (25 bp)
CATAGAGGCTTCTTGTGCTGATCGT
LOC_Os03g12430
Os.37638.1.S1_at--52--6171Chr03:6542911..6542935 (25 bp)
GAGGAGCTAGCACCAAAAATATCAG
LOC_Os03g12430
Os.37638.1.S1_at--97--5331Chr03:6542869..6542893 (25 bp)
GAAGTGCTGTCACATTAACCAATGT
LOC_Os03g12430
Os.37638.1.S1_at--184--5451Chr03:6542837..6542861 (25 bp)
GAACCCTCCTACAAGTATCATGCTT
LOC_Os03g12430
Os.37638.1.S1_at--1026--6051Chr03:6542675..6542699 (25 bp)
GAGTTACTTCATTTACTTGCCCATT
LOC_Os03g12430
Os.37638.1.S1_at--601--10471Chr03:6542663..6542687 (25 bp)
TTACTTGCCCATTTCCTGTAGTTTT
LOC_Os03g12430
Os.37638.1.S1_at--782--8791Chr03:6542629..6542653 (25 bp)
TGTTCAGATCCTCCAGTCCAAGGGA
LOC_Os03g12430
Os.37638.1.S1_at--42--9211Chr03:6542613..6542637 (25 bp)
TCCAAGGGATGCTTCAGGACATGTG
LOC_Os03g12430
Os.37638.1.S1_at--38--4631Chr03:6542578..6542602 (25 bp)
GCGATGGAATTCTCAGGTTCCTCAT
LOC_Os03g12430
Os.37638.1.S1_at--1154--7891Chr03:6542563..6542587 (25 bp)
GGTTCCTCATTAGTATGCTCCCAAA
LOC_Os03g12430
Target Sequence 
GGGTGCTCTGTGACACTGATGTCTACAATGGTTTGTTGCTTAGGCTGTGTGTGGAAGGGCATGTTGGTGAGGCCTTGGCG
TTGGCTAAGAAGGTTGCTGAGAGGGGGATTCTCATAGAGGCTTCTTGTGCTGATCGTTTGATGGATTTGCTAAAGCAATA
TGGTGATGAGGAGCTAGCACCAAAAATATCAGAACTGAGGAGGTGCTCTGAAGTGCTGTCACATTAACCAATGTGTGATC
CGAACCCTCCTACAAGTATCATGCTTGGTTGATTTCAAATCAAGAAAAATNCTTCCGNGCTGCATGATTACAGCAAGAAA
ANGGCTTTGAGGGNTTTGTTACNGNTGAAATAGATTGGTGGGGATAGGGTGCAGCACAGAGTGATTTGTGTGAGCAAAAT
GTGGATGAGTTACTTCATTTACTTGCCCATTTCCTGTAGTTTTTCTGAACTCTGTTCAGATCCTCCAGTCCAAGGGATGC
TTCAGGACATGTGAACTATGATTGCGATGGAATTCTCAGGTTCCTCATTAGTATGCTCCCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37638.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis