Browse Element(s) Details


Os.38086.2.S1_x_at

Description gb:NM_184361.1
DB_XREF= gi:34895811
GEN=P0434B04.16
TID=Os.38086.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38086 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0434B04.17 (P0434B04.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0434B04.16 (P0434B04.16), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0553011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g05500Os.7837.1.S1_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.46048.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500Os.7837.1.S1_s_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05500OsAffx.10921.1.S1_x_at11/111+2596652..2609664zinc finger in N-recognin family protein, expressed
LOC_Os01g05510Os.49377.1.S1_at11/111+2610474..2619994expressed protein
LOC_Os01g05520Os.30995.1.S1_at11/111+2626176..2626852expressed protein
LOC_Os01g05530Os.38086.2.S1_x_at11/111+2629420..2634632expressed protein
LOC_Os01g05530Os.38086.1.S1_at8/111+2629420..2634632expressed protein
LOC_Os01g05540OsAffx.10922.1.S1_at11/111+2637802..2641467expressed protein
LOC_Os01g05540Os.38296.1.S1_at10/111+2637802..2641467expressed protein
LOC_Os01g05550OsAffx.10565.2.A1_at11/111+2647936..2648391expressed protein
LOC_Os01g05560Os.6138.1.S1_at10/111+2649467..2652437expressed protein
LOC_Os01g05570Os.6138.2.S1_at8/111+2657624..2658103hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.38086.2.S1_x_at--527--2291Chr01:2633534..2633558 (25 bp)
AAATGATACCGGCTGATCTGCAAGG
LOC_Os01g05530
Os.38086.2.S1_x_at--73--5651Chr01:2633611..2633635 (25 bp)
GACAGCAGCTCATTAATGTCAGCTA
LOC_Os01g05530
Os.38086.2.S1_x_at--676--7931Chr01:2633647..2633671 (25 bp)
GGATTATTGGTCAATTTGCACACTG
LOC_Os01g05530
Os.38086.2.S1_x_at--528--3111Chr01:2633683..2633707 (25 bp)
AATATTAGTCCAGCTATTAGCGAAG
LOC_Os01g05530
Os.38086.2.S1_x_at--759--10051Chr01:2633718..2633742 (25 bp)
TAGTTTATTTAAGCACATCCCGTAT
LOC_Os01g05530
Os.38086.2.S1_x_at--352--4191Chr01:2633736..2633760 (25 bp)
CCCGTATTTGGACTGCTGGATGAAC
LOC_Os01g05530
Os.38086.2.S1_x_at--902--2691Chr01:2633785..2633809 (25 bp)
AAGCTCGTTGCTAATTTGGATTCAA
LOC_Os01g05530
Os.38086.2.S1_x_at--900--8211Chr01:2633894..2633918 (25 bp)
GGAATTCCGATGTTCATATACCTGA
LOC_Os01g05530
Os.38086.2.S1_x_at--1105--4191Chr01:2634017..2634041 (25 bp)
CCCCTTTCGTTTGTCATGGACAGAT
LOC_Os01g05530
Os.38086.2.S1_x_at--547--3431Chr01:2634037..2634061 (25 bp)
CAGATTATATTTTAACTTCCCGCTA
LOC_Os01g05530
Os.38086.2.S1_x_at--974--3251Chr01:2634064..2634088 (25 bp)
CAACGTACTTGCGTGCCATTCAAAA
LOC_Os01g05530
Target Sequence 
AAATGATACCGGCTGATCTGCAAGGTGATCTACATGATTTAAAGGAAAATCCTTTGAAGAGACTTGAATCAGTGATAGAC
AGCAGCTCATTAATGTCAGCTAAAGAGAAGAAAGGATTATTGGTCAATTTGCACACTGAATATAAAACCAATATTAGTCC
AGCTATTAGCGAAGATGATCGTGATAGTTTATTTAAGCACATCCCGTATTTGGACTGCTGGATGAACAGAACGGAAGACA
ATGAGTATCTAAAGCTCGTTGCTAATTTGGATTCAAAAAAAGTGGCTTTGAAAGTTAACAAGGTTGGAACGGATAAGAGA
AAACCATCTAAAAATGGTATCTTACAGTTTGATTTTATGAGGAATTCCGATGTTCATATACCTGAAAAGGCATTAAAGGA
TGGTATCACCCCCTTTCGTTTGTCATGGACAGATTATATTTTAACTTCCCGCTACCCAACGTACTTGCGTGCCATTCAAA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.38086.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis