Browse Element(s) Details


Os.3825.1.S1_at

Description gb:AK064943.1
DB_XREF= gi:32974961
TID=Os.3825.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000P13, full insert sequence.
FL= gb:AK121013.1 gb:AK064943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1346011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g13420Os.27593.1.S1_at11/111+7467512..7469531SOUL heme-binding protein, expressed
LOC_Os01g13430Os.3822.2.S2_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.2.S1_x_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13430Os.3822.1.S1_at11/111+7474480..7479616CAS/CSE protein, C-terminus containing protein, expressed
LOC_Os01g13440Os.43374.1.S1_at11/111+7481712..7482527expressed protein
LOC_Os01g13450OsAffx.11034.2.S1_s_at11/111+7486035..7486751hypothetical protein
LOC_Os01g13460Os.3825.1.S1_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13460Os.45983.1.S1_x_at11/111+7491859..7495193Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os01g13470Os.3828.1.S1_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13470Os.3828.2.S1_x_at11/111+7503057..7508570KH domain containing protein, expressed
LOC_Os01g13480Os.36648.1.S1_x_at10/111+7514014..7515543Glutaredoxin family protein, expressed
LOC_Os01g13490Os.24496.1.S1_at11/111+7516419..7521235expressed protein
LOC_Os01g13490OsAffx.23226.1.S1_x_at1/111+7516419..7521235expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009611biological_processresponse to wounding
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3825.1.S1_at--20--5971Chr01:7492308..7492332 (25 bp)
GAGAAGGTGATTGCCGCCATGTCTC
LOC_Os01g13460
Os.3825.1.S1_at--406--4431Chr01:7492293..7492317 (25 bp)
GCCATGTCTCGCGTGATGAACTCAG
LOC_Os01g13460
Os.3825.1.S1_at--849--1251Chr01:7492111..7492135 (25 bp)
AGATTCTGACTTAGCGATCCAAGGG
LOC_Os01g13460
Os.3825.1.S1_at--354--10231Chr01:7492039..7492063 (25 bp)
TTTGTGGTCGGTGTAGTTTTTCTCT
LOC_Os01g13460
Os.3825.1.S1_at--782--6731Chr01:7491986..7492010 (25 bp)
GTTCTTAGTTTATTGCTTGTGGCAG
LOC_Os01g13460
Os.3825.1.S1_at--534--7531Chr01:7491968..7491992 (25 bp)
GTGGCAGAACCATAAACAGTACATC
LOC_Os01g13460
Os.3825.1.S1_at--1083--7011Chr01:7491950..7491974 (25 bp)
GTACATCTCGTCAAATGCATGAGTT
LOC_Os01g13460
Os.3825.1.S1_at--707--2331Chr01:7491922..7491946 (25 bp)
AAAGAAGTCACCTGCTTTTCTGCTA
LOC_Os01g13460
Os.3825.1.S1_at--1062--3831Chr01:7491911..7491935 (25 bp)
CTGCTTTTCTGCTAATTCTGTGTTT
LOC_Os01g13460
Os.3825.1.S1_at--742--3151Chr01:7491898..7491922 (25 bp)
AATTCTGTGTTTTTGTTTGTATCTC
LOC_Os01g13460
Os.3825.1.S1_at--781--10351Chr01:7491860..7491884 (25 bp)
TTTATACTTCGGCATGTTACTCGGG
LOC_Os01g13460
Target Sequence 
GAGAAGGTGATTGCCGCCATGTCTCGCGTGATGAACTCAGGGTAGAATCAGTTGGGGAGTGGGCGCCNCCGGTAGAGGCA
GCTTTACTTCGTTCGCTGGTTGCAGACAAGCAGCAAGCAGTCGGTTGGACGGACACCCATCCACCCACCTTTCAGCGCTG
TTGATAGAAGAAGTTTGTAGGCAGAGAAAGAAAGCTCAGATTCTGACTTAGCGATCCAAGGGGAAGACAAAGCTCTCAAG
TTAAAACTGCCATTGTTGTATGGTAGGCTTTTGTGGTCGGTGTAGTTTTTCTCTTTTTGTTGTTTATTGGGGAGAATACC
ATGTTCTTAGTTTATTGCTTGTGGCAGAACCATAAACAGTACATCTCGTCAAATGCATGAGTTGGGAAAGAAGTCACCTG
CTTTTCTGCTAATTCTGTGTTTTTGTTTGTATCTCAAGTGAGTTGGTGTTTATACTTCGGCATGTTACTCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3825.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis