Browse Element(s) Details

Os.38638.3.S1_x_at

Description

gb:AF140229.1
DB_XREF= gi:4809190
TID=Os.38638.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.38638 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsENOD93a mRNA for early nodulin, complete cds
DEF=Oryza sativa early nodulin mRNA, partial cds.
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g04990	7/11	Early nodulin 93, putative, expressed
LOC_Os06g05010	5/11	Early nodulin 93, putative, expressed
LOC_Os06g04950	4/11	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05020	4/11	Early nodulin 93, putative, expressed
LOC_Os06g04940	3/11	expressed protein
LOC_Os06g05000	2/11	Early nodulin 93 ENOD93 protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g04940	Os.37255.1.A1_at	10/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04940	Os.38638.3.S1_x_at	3/11	6	+	2174884..2175927	expressed protein
LOC_Os06g04950	Os.38638.2.S1_at	11/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	OsAffx.27459.4.S1_at	6/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04950	Os.38638.3.S1_x_at	4/11	6	+	2179251..2180117	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g04960	OsAffx.12420.1.S1_at	2/11	6	+	2183984..2187338	hypothetical protein
LOC_Os06g04970	Os.17050.1.A1_at	10/11	6	+	2188914..2193837	expressed protein
LOC_Os06g04980	Os.3577.1.S1_x_at	5/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	Os.3577.2.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04980	OsAffx.4692.1.S1_at	1/11	6	+	2194354..2197374	F-box domain containing protein
LOC_Os06g04990	Os.38638.1.S1_at	11/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.38638.3.S1_x_at	7/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g04990	Os.37255.1.A1_at	1/11	6	+	2198265..2199545	Early nodulin 93, putative, expressed
LOC_Os06g05000	OsAffx.27459.2.S1_s_at	11/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	Os.38638.3.S1_x_at	2/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05000	OsAffx.27459.4.S1_at	1/11	6	+	2204711..2205507	Early nodulin 93 ENOD93 protein, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	OsAffx.27459.3.S1_x_at	11/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05010	Os.38638.3.S1_x_at	5/11	6	+	2207736..2208562	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.4.S1_s_at	11/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05020	Os.38638.3.S1_x_at	4/11	6	+	2211596..2212488	Early nodulin 93, putative, expressed
LOC_Os06g05030	Os.31312.5.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05030	Os.31312.2.S1_x_at	4/11	6	+	2217374..2220633	retrotransposon protein, putative, unclassified
LOC_Os06g05040	NA	NA	6	+	2221262..2227416	retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0005739	cellular_component	mitochondrion

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.38638.3.S1_x_at--647--339	1	NONE	CAGCTACTTCACTTCAGAACTAGTT	NONE
Os.38638.3.S1_x_at--818--143	1	NONE	AGAACTAGTTTCTTCTCAGCTCCAT	NONE
Os.38638.3.S1_x_at--619--51	1	Chr06:2208440..2208464 (25 bp)	ATCGATCTTGCTCGACAATGTCGAC	LOC_Os06g05010
Os.38638.3.S1_x_at--861--893	2	Chr06:2212337..2212361 (25 bp)	TGACCCGTGCTCACCTGGAGCAGAG	LOC_Os06g05020
Os.38638.3.S1_x_at--477--165	1	Chr06:2199107..2199254 (25 bp)	AGCGCTGCTCGCGTGAGGCAAACAT	LOC_Os06g04990
Os.38638.3.S1_x_at--876--403	1	Chr06:2199061..2199085 (25 bp)	CGTTGCGACCATCGCTTCTGCAGTT	LOC_Os06g04990
Os.38638.3.S1_x_at--1--933	1	Chr06:2198863..2199061 (25 bp)	TCCCACCCTGGCGAGCGTGAGGATG	LOC_Os06g04990
Os.38638.3.S1_x_at--925--89	6	Chr06:2211934..2211958 (25 bp)	AGGCGCTGATCATCTGCACGGCGGC	LOC_Os06g05020
Os.38638.3.S1_x_at--783--333	5	Chr06:2211918..2211942 (25 bp)	CACGGCGGCCGGGATGGCATACTTC	LOC_Os06g05020
Os.38638.3.S1_x_at--928--799	5	Chr06:2207988..2208012 (25 bp)	GGATGGCATACTTCGTCGCCGCCGA	LOC_Os06g05010
Os.38638.3.S1_x_at--439--129	3	Chr06:2211877..2211901 (25 bp)	AGATCCTCTCGCTGGCGAGGAGGCA	LOC_Os06g05020

Target Sequence

CAGCTACTTCACTTCAGAACTAGTTTCTTCTCAGCTCCATCGATCTTGCTCGACAATGTCGACGACGGTGACCCGTGCTC
ACCTGGAGCAGAGGCTCGCCCTCGCCAAGCGCTGCTCGCGTGAGGCAAACATTGCAGGGGTTAAGGCGGCTGCCGTTGCG
ACCATCGCTTCTGCAGTTCCCACCCTGGCGAGCGTGAGGATGCTGCCATGGGCAAAGGCCAACATCAACCCGACGGGGCA
GGCGCTGATCATCTGCACGGCGGCCGGGATGGCATACTTCGTCGCCGCCGACAAGAAGATCCTCTCGCTGGCGAGGAGGC
A

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis