Browse Element(s) Details


Os.39065.1.A1_s_at

Description gb:CB632032
DB_XREF= gi:29627021
DB_XREF=OSIIEb10A07.r
CLONE=OSIIEb10A07
TID=Os.39065.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.39065 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_175386.1 (A.thaliana) hydrogenase protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5239011/11Peptidase M16 inactive domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g52340OsAffx.24832.1.S1_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52340Os.4171.1.S1_s_at11/112+32033056..32039261SHORT VEGETATIVE PHASE protein, putative, expressed
LOC_Os02g52350OsAffx.12609.1.S1_at11/112+32040339..32041341hypothetical protein
LOC_Os02g52360Os.53007.1.S1_at11/112+32041897..32046431peptidyl-prolyl cis-trans isomerase, cyclophilin-type family protein, expressed
LOC_Os02g52370Os.53665.1.S1_at11/112+32046713..32050017armadillo/beta-catenin repeat family protein, putative, expressed
LOC_Os02g52380OsAffx.24833.1.S1_at11/112+32053128..32054420hypothetical protein
LOC_Os02g52390OsAffx.24834.1.S1_x_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.15022.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390OsAffx.24834.1.S1_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.39065.1.A1_s_at11/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.27478.2.A1_s_at10/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52390Os.54818.1.S1_at1/112+32056376..32063561Peptidase M16 inactive domain containing protein, expressed
LOC_Os02g52400Os.7555.1.S1_at11/112+32063121..32064413expressed protein
LOC_Os02g52410Os.48354.1.S1_at11/112+32065339..32074577expressed protein
LOC_Os02g52410Os.45957.4.S1_x_at5/112+32065339..32074577expressed protein
LOC_Os02g52410Os.24327.1.A1_at1/112+32065339..32074577expressed protein
LOC_Os02g52420Os.17368.1.S1_at10/112+32075424..32079700methionine aminopeptidase, putative, expressed
LOC_Os02g52430Os.27901.1.S1_at11/112+32082237..32084304Regulator of ribonuclease-like protein 1, putative, expressed
LOC_Os02g52440OsAffx.12610.1.S1_at11/112+32085646..32086086hypothetical protein
LOC_Os02g52450Os.15987.1.S1_at11/112+32086877..32088937Regulator of ribonuclease-like protein 3, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0051605biological_processproteolysis during protein maturation
GO:0005739cellular_componentmitochondrion
GO:0009507cellular_componentchloroplast
GO:0004222molecular_functionmetalloendopeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39065.1.A1_s_at--74--7991Chr02:32063433..32063457 (25 bp)
GGATGATGGGCAAAGTGTATTCAGT
LOC_Os02g52390
Os.39065.1.A1_s_at--998--6251Chr02:32063437..32063461 (25 bp)
GATGGGCAAAGTGTATTCAGTGTAT
LOC_Os02g52390
Os.39065.1.A1_s_at--1081--8231Chr02:32063441..32063465 (25 bp)
GGCAAAGTGTATTCAGTGTATTTCA
LOC_Os02g52390
Os.39065.1.A1_s_at--658--3291Chr02:32063443..32063467 (25 bp)
CAAAGTGTATTCAGTGTATTTCACT
LOC_Os02g52390
Os.39065.1.A1_s_at--1096--3591Chr02:32063470..32063494 (25 bp)
CATTGCTGCTTTCCCCATCAAACAA
LOC_Os02g52390
Os.39065.1.A1_s_at--574--9111Chr02:32063473..32063497 (25 bp)
TGCTGCTTTCCCCATCAAACAAGTC
LOC_Os02g52390
Os.39065.1.A1_s_at--750--3811Chr02:32063475..32063499 (25 bp)
CTGCTTTCCCCATCAAACAAGTCAG
LOC_Os02g52390
Os.39065.1.A1_s_at--759--9071Chr02:32063476..32063500 (25 bp)
TGCTTTCCCCATCAAACAAGTCAGA
LOC_Os02g52390
Os.39065.1.A1_s_at--1094--4871Chr02:32063477..32063501 (25 bp)
GCTTTCCCCATCAAACAAGTCAGAT
LOC_Os02g52390
Os.39065.1.A1_s_at--819--10291Chr02:32063479..32063503 (25 bp)
TTTCCCCATCAAACAAGTCAGATGT
LOC_Os02g52390
Os.39065.1.A1_s_at--220--4211Chr02:32063482..32063506 (25 bp)
CCCCATCAAACAAGTCAGATGTACG
LOC_Os02g52390
Target Sequence 
GGATGATGGGCAAAGTGTATTCAGTGTATTTCACTNGCATTGCTGCTTTCCCCATCAAACAAGTCAGATGTACG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39065.1.A1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis