Browse Element(s) Details


Os.3927.2.S1_s_at

Description gb:AK072113.1
DB_XREF= gi:32982136
TID=Os.3927.2
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.3927 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unnamed protein product (Gene), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013123H08, full insert sequence.
FL= gb:AK072113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1500011/11lipase class 3 family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14940OsAffx.23252.1.S1_at11/111+8376855..8377388pectinesterase inhibitor domain containing protein, expressed
LOC_Os01g14950Os.3405.1.S1_at11/111+8378917..8384036Importin alpha-1b subunit, putative, expressed
LOC_Os01g14960Os.30390.1.S1_at11/111+8384391..8385661expressed protein
LOC_Os01g14970OsAffx.11058.1.S1_x_at11/111+8391321..8392277hypothetical protein
LOC_Os01g14980Os.3924.1.S1_at10/111+8393302..8395386pollen-specific protein, putative, expressed
LOC_Os01g14990OsAffx.22225.2.S1_at11/111+8398350..8399127hypothetical protein
LOC_Os01g14990OsAffx.22225.2.S1_s_at11/111+8398350..8399127hypothetical protein
LOC_Os01g15000Os.3927.1.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.3.S1_x_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15000Os.3927.2.S1_s_at11/111+8401049..8405176lipase class 3 family protein, putative, expressed
LOC_Os01g15010Os.10633.1.S1_at11/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.23253.1.S1_at9/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15010OsAffx.7494.1.S1_at1/111+8410651..8415751GTP-binding protein SAR1A, putative, expressed
LOC_Os01g15020Os.46044.1.S1_s_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed
LOC_Os01g15020Os.46044.2.S1_x_at11/111+8417793..8427082WD-40 repeat family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3927.2.S1_s_at--415--91Chr01:8404902..8404926 (25 bp)
ATTCGCGGACGTGGTTAGATCCCAT
LOC_Os01g15000
Os.3927.2.S1_s_at--278--10631Chr01:8404903..8404927 (25 bp)
TTCGCGGACGTGGTTAGATCCCATC
LOC_Os01g15000
Os.3927.2.S1_s_at--862--9331Chr01:8404904..8404928 (25 bp)
TCGCGGACGTGGTTAGATCCCATCC
LOC_Os01g15000
Os.3927.2.S1_s_at--48--4151Chr01:8404905..8404929 (25 bp)
CGCGGACGTGGTTAGATCCCATCCA
LOC_Os01g15000
Os.3927.2.S1_s_at--561--4031Chr01:8404932..8404956 (25 bp)
CGTTCATTCATTTTGTTGGTTTACA
LOC_Os01g15000
Os.3927.2.S1_s_at--886--6731Chr01:8404933..8404957 (25 bp)
GTTCATTCATTTTGTTGGTTTACAC
LOC_Os01g15000
Os.3927.2.S1_s_at--520--5331Chr01:8405093..8405117 (25 bp)
GAAGATCAAATGTCAATTAATTAGA
LOC_Os01g15000
Os.3927.2.S1_s_at--1018--5591Chr01:8405133..8405157 (25 bp)
GAAATTTATTAATTGGACTCAGGAC
LOC_Os01g15000
Os.3927.2.S1_s_at--57--2251Chr01:8405134..8405158 (25 bp)
AAATTTATTAATTGGACTCAGGACT
LOC_Os01g15000
Os.3927.2.S1_s_at--1157--171Chr01:8405136..8405160 (25 bp)
ATTTATTAATTGGACTCAGGACTTG
LOC_Os01g15000
Os.3927.2.S1_s_at--147--10411Chr01:8405138..8405162 (25 bp)
TTATTAATTGGACTCAGGACTTGGC
LOC_Os01g15000
Target Sequence 
ATTCGCGGACGTGGTTAGATCCCATCCATCCGTTCATTCATTTTGTTGGTTTACACACCACACTGCTGCAGTGCTGCTGT
ATGCTACTGCAGCAATGATTCTTTCTTCCCAGAGTGGAATGCCATACAAGTGTCACACCCAGATGCTGATTTTCTGTTTT
GACACTAAAAAAAGAAGGNCCTCAGATAGATGAAGATCAAATGTCAATTAATTAGACTCTAAACTATATTAGAAATTTAT
TAATTGGACTCAGGACTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3927.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis