Browse Element(s) Details

Os.39828.1.A1_s_at

Description

gb:CF317944
DB_XREF= gi:33689705
DB_XREF=HD--07-N05.b1
CLONE=HD--07-N05
TID=Os.39828.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.39828 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein pir:T50795 (A.thaliana) T50795 hypothetical protein T30N20_130 - Arabidopsis thaliana
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g52690	9/11	CBS domain containing protein, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g52630	Os.10701.1.S1_at	11/11	3	+	30132228..30135671	endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640	Os.27782.1.S1_at	11/11	3	+	30138771..30142128	expressed protein
LOC_Os03g52650	OsAffx.3586.1.S1_s_at	11/11	3	+	30143453..30144678	Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660	Os.5148.1.S1_at	11/11	3	+	30147820..30149331	ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670	Os.37935.1.S1_at	11/11	3	+	30149372..30150915	GRAM domain containing protein, expressed
LOC_Os03g52680	Os.18485.1.S1_s_at	11/11	3	+	30154305..30155477	expressed protein
LOC_Os03g52690	Os.12286.1.S1_at	11/11	3	+	30156918..30160996	CBS domain containing protein, expressed
LOC_Os03g52690	Os.12286.1.S2_a_at	11/11	3	+	30156918..30160996	CBS domain containing protein, expressed
LOC_Os03g52690	Os.39828.1.A1_s_at	9/11	3	+	30156918..30160996	CBS domain containing protein, expressed
LOC_Os03g52700	Os.15893.1.A1_at	9/11	3	+	30165974..30170841	expressed protein
LOC_Os03g52710	OsAffx.13471.1.S1_at	11/11	3	+	30172325..30174164	expressed protein
LOC_Os03g52720	Os.53148.1.S1_at	11/11	3	+	30174754..30176904	magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52730	Os.21398.1.S1_at	11/11	3	+	30178817..30180732	magnesium-dependent phosphatase-1 family protein, expressed
LOC_Os03g52740	Os.35344.3.S1_x_at	5/11	3	+	30182052..30185223	SWIM zinc finger family protein
LOC_Os03g52740	Os.35344.18.S1_x_at	5/11	3	+	30182052..30185223	SWIM zinc finger family protein
LOC_Os03g52740	OsAffx.22940.5.S1_x_at	1/11	3	+	30182052..30185223	SWIM zinc finger family protein

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Gene Ontology Classification

GO id	Type	Name
GO:0005739	cellular_component	mitochondrion

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.39828.1.A1_s_at--443--575	1	Chr03:30157357..30157381 (25 bp)	GACGTTGGTCACTCGCTCCTGCCAT	LOC_Os03g52690
Os.39828.1.A1_s_at--450--189	1	Chr03:30157356..30157380 (25 bp)	ACGTTGGTCACTCGCTCCTGCCATT	LOC_Os03g52690
Os.39828.1.A1_s_at--821--1065	1	Chr03:30157300..30157324 (25 bp)	TTCCAAATAACGCTCGCTCGGGATG	LOC_Os03g52690
Os.39828.1.A1_s_at--520--921	1	Chr03:30157299..30157323 (25 bp)	TCCAAATAACGCTCGCTCGGGATGA	LOC_Os03g52690
Os.39828.1.A1_s_at--845--437	1	Chr03:30157298..30157322 (25 bp)	CCAAATAACGCTCGCTCGGGATGAT	LOC_Os03g52690
Os.39828.1.A1_s_at--866--327	1	Chr03:30157297..30157321 (25 bp)	CAAATAACGCTCGCTCGGGATGATG	LOC_Os03g52690
Os.39828.1.A1_s_at--1011--225	1	Chr03:30157296..30157320 (25 bp)	AAATAACGCTCGCTCGGGATGATGA	LOC_Os03g52690
Os.39828.1.A1_s_at--329--309	1	Chr03:30157295..30157319 (25 bp)	AATAACGCTCGCTCGGGATGATGAC	LOC_Os03g52690
Os.39828.1.A1_s_at--185--35	1	Chr03:30157294..30157318 (25 bp)	ATAACGCTCGCTCGGGATGATGACG	LOC_Os03g52690

Target Sequence

GACGTTGGTCACTCGCTCCTGCCATTGAGGCTGNGCCTGTTTGAAAAAAACTCCCTTTTCCAAATAACGCTCGCTCGGGA
TGATGACG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis