Browse Element(s) Details

Os.39915.1.A1_s_at

Description

gb:CF321778
DB_XREF= gi:33693539
DB_XREF=HD--13-C10.b1
CLONE=HD--13-C10
TID=Os.39915.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39915 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g02650	11/11	expressed protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g02590	Os.52636.1.S1_at	4/11	6	+	912780..920283	START domain-containing protein, putative, expressed
LOC_Os06g02600	Os.5273.2.S1_x_at	10/11	6	+	921217..924267	DAG protein, chloroplast precursor, putative, expressed
LOC_Os06g02610	OsAffx.27445.2.S1_x_at	11/11	6	+	924433..925154	hypothetical protein
LOC_Os06g02610	OsAffx.27445.1.S1_x_at	4/11	6	+	924433..925154	hypothetical protein
LOC_Os06g02620	Os.44821.1.A1_x_at	10/11	6	+	926340..931584	DnaJ C terminal region family protein, expressed
LOC_Os06g02620	Os.7738.1.S1_at	8/11	6	+	926340..931584	DnaJ C terminal region family protein, expressed
LOC_Os06g02630	Os.32596.1.S1_x_at	11/11	6	+	932239..935006	expressed protein
LOC_Os06g02630	OsAffx.27427.1.S1_at	1/11	6	+	932239..935006	expressed protein
LOC_Os06g02640	OsAffx.27423.1.S1_at	11/11	6	+	936167..939109	hypothetical protein
LOC_Os06g02650	Os.39915.1.A1_s_at	11/11	6	+	940733..945388	expressed protein
LOC_Os06g02650	OsAffx.8785.1.S1_at	2/11	6	+	940733..945388	expressed protein
LOC_Os06g02650	Os.32597.1.S1_x_at	1/11	6	+	940733..945388	expressed protein
LOC_Os06g02660	OsAffx.27424.1.S1_at	11/11	6	+	946958..948607	hypothetical protein
LOC_Os06g02670	OsAffx.27430.1.S1_at	5/11	6	+	951808..952278	hypothetical protein
LOC_Os06g02680	Os.52461.1.S1_at	1/11	6	+	958935..961222	hypothetical protein
LOC_Os06g02680	OsAffx.14477.1.S1_at	1/11	6	+	958935..961222	hypothetical protein
LOC_Os06g02690	OsAffx.27425.1.S1_at	11/11	6	+	962221..962906	hypothetical protein
LOC_Os06g02700	OsAffx.2147.1.S1_at	2/11	6	+	965651..969609	retrotransposon protein, putative, unclassified
LOC_Os06g02700	OsAffx.26082.1.S1_at	1/11	6	+	965651..969609	retrotransposon protein, putative, unclassified
LOC_Os06g02700	OsAffx.26082.1.S1_x_at	1/11	6	+	965651..969609	retrotransposon protein, putative, unclassified
LOC_Os06g02700	OsAffx.30486.1.S1_at	1/11	6	+	965651..969609	retrotransposon protein, putative, unclassified

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.39915.1.A1_s_at--275--343	1	Chr06:944848..944872 (25 bp)	CAGAGTTGGCCACATTATTGCTACA	LOC_Os06g02650
Os.39915.1.A1_s_at--651--231	1	Chr06:944879..944903 (25 bp)	AAAGGACATGTGGAAGCTTCTGGCG	LOC_Os06g02650
Os.39915.1.A1_s_at--128--349	1	Chr06:944969..944993 (25 bp)	CAGGAATGTGCTATGCCAAGGAGGC	LOC_Os06g02650
Os.39915.1.A1_s_at--274--489	1	Chr06:945034..945058 (25 bp)	GCATTACCCGAGATCGCCACGAAAT	LOC_Os06g02650
Os.39915.1.A1_s_at--378--855	1	Chr06:945061..945085 (25 bp)	TGGTTGAACACCACCCGTAGTAATC	LOC_Os06g02650
Os.39915.1.A1_s_at--651--1049	1	Chr06:945093..945117 (25 bp)	TTAAAGCAGCACAAATTCGATCAAT	LOC_Os06g02650
Os.39915.1.A1_s_at--512--353	1	Chr06:945136..945160 (25 bp)	CATCCCAAGGCCCTAGCTATATATA	LOC_Os06g02650
Os.39915.1.A1_s_at--513--741	1	Chr06:945230..945254 (25 bp)	GTGATTGTTTTTCCTACTCTTTCTT	LOC_Os06g02650
Os.39915.1.A1_s_at--210--317	1	Chr06:945302..945326 (25 bp)	AATTGCGTGAGTACGTGTGCTTATA	LOC_Os06g02650
Os.39915.1.A1_s_at--451--191	1	Chr06:945314..945338 (25 bp)	ACGTGTGCTTATAGAGTGTGCTACT	LOC_Os06g02650
Os.39915.1.A1_s_at--122--909	1	Chr06:945332..945356 (25 bp)	TGCTACTCTCTACCTATATCTTCAT	LOC_Os06g02650

Target Sequence

CAGAGTTGGCCACATTATTGCTACAATTACAAAAGGACATGTGGAAGCTTCTGGCGGAGGTGTGGACGGAGATCGTCGTG
TACGTGGCTGCGTCCAACGAGGTGGAGCGTATCATGGCGCACAGGAATGTGCTATGCCAAGGAGGCGAGTTCATCACCGT
GCTTTGGGCTCTCACGACACACACCGGCATTACCCGAGATCGCCACGAAATCGTGGTTGAACACCACCCGTAGTAATCCC
CCAAATTAAAGCAGCACAAATTCGATCAATATTATTGGGGTCCATGTCCATCCCAAGGCCCTAGCTATATATATATTATG
TGTATTTGCTTGCTTTCTTAATTATTTGCTTAATTTGGATGCATATATATGCATGCATCAAAGTGATTGTTTTTCCTACT
CTTTCTTTAATTCTTTCTTTCTTTTGTTGTAATAACTAATGTCTCTACTACTGTAATTGCGTGAGTACGTGTGCTTATAG
AGTGTGCTACTCTCTACCTATATCTTCAT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis