Browse Element(s) Details


Os.41057.1.S1_at

Description gb:NM_193186.1
DB_XREF= gi:34913455
GEN=P0702H08.17
TID=Os.41057.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41057 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) P0702H08.17 (P0702H08.17), mRNA
DEF=Oryza sativa (japonica cultivar-group) P0702H08.17 (P0702H08.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3468010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g34630Os.54477.1.S1_at5/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_x_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.20298.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34630OsAffx.28592.1.S1_at1/111+19422728..19427004retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os01g34639NANA1+19433637..19434067NA
LOC_Os01g34650OsAffx.17536.1.S1_at1/111+19435496..19436383NA
LOC_Os01g34660Os.34335.1.S1_x_at9/111+19437755..19440162expressed protein
LOC_Os01g34660Os.34335.1.S1_at7/111+19437755..19440162expressed protein
LOC_Os01g34670Os.32787.2.S1_x_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34670Os.32787.3.S1_s_at11/111+19442093..19449256calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os01g34680Os.41057.1.S1_at10/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.55478.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34680Os.5306.1.S1_at1/111+19450258..19456039hypothetical protein
LOC_Os01g34690Os.8252.1.S1_s_at11/111+19456826..19460730expressed protein
LOC_Os01g34690Os.8252.1.S1_at4/111+19456826..19460730expressed protein
LOC_Os01g34690Os.37713.1.S1_at1/111+19456826..19460730expressed protein
LOC_Os01g34700Os.7133.1.S1_at11/111+19462649..19466740Dienelactone hydrolase family protein, expressed
LOC_Os01g34710OsAffx.31780.1.S1_at11/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34710OsAffx.31780.2.S1_s_at11/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34710OsAffx.31780.2.S1_x_at2/111+19469798..19475260transposon protein, putative, unclassified
LOC_Os01g34720OsAffx.6971.1.S1_at3/111+19479590..19481575retrotransposon protein, putative, unclassified
LOC_Os01g34720OsAffx.31700.1.S1_at1/111+19479590..19481575retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0005834cellular_componentheterotrimeric G-protein complex
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41057.1.S1_at--1023--9613Chr03:24362977..24363001 (25 bp)
TCATGGTTGTGCGACTGTCGCAAGA
NONE
Os.41057.1.S1_at--566--1951Chr01:19452379..19452403 (25 bp)
ACTGTCGCAAGAGGATGGTCAAGGA
LOC_Os01g34680
Os.41057.1.S1_at--348--10292Chr03:24363027..24363051 (25 bp)
TTTCGACACCATCGCGACGTTGGTT
NONE
Os.41057.1.S1_at--360--3533Chr03:24363036..24363060 (25 bp)
CATCGCGACGTTGGTTGCATGGACG
NONE
Os.41057.1.S1_at--1136--1311Chr01:19452271..19452295 (25 bp)
AGAGCAGATCTTGGGCGGAGGTTGT
LOC_Os01g34680
Os.41057.1.S1_at--100--2694Chr06:25634385..25634409 (25 bp)
AAGCGGAGCTGTGGCGGCTAGCTAG
NONE
Os.41057.1.S1_at--775--1571Chr01:19452204..19452228 (25 bp)
AGCTGCAATCCCTGCTTTGGTAGCT
LOC_Os01g34680
Os.41057.1.S1_at--99--3051Chr01:19452201..19452222 (22 bp)
AATCCCTGCTTTGGTAGCTCATATG
LOC_Os01g34680
Os.41057.1.S1_at--107--6971NONE
GTAGCTCATATGATGCGGCATGTCT
NONE
Os.41057.1.S1_at--599--2311Chr01:19451509..19451529 (21 bp)
AAAGTTGCCCGACAATGCAGTTCAA
LOC_Os01g34680
Os.41057.1.S1_at--874--4531Chr01:19451408..19451523 (25 bp)
GCCCGACAATGCAGTTCAAGCTGAT
LOC_Os01g34680
Target Sequence 
TCATGGTTGTGCGACTGTCGCAAGAGGATGGTCAAGGAACATCGCCGGGGTTTCGACACCATCGCGACGTTGGTTGCATG
GACGATCTGGAAGGAAAGAAACAATCGAGTCTTCAACCAGAAGAGCAGATCTTGGGCGGAGGTTGTAAGGGTTATGACGG
GTGAAGCGGAGCTGTGGCGGCTAGCTAGAGCTGCAATCCCTGCTTTGGTAGCTCATATGATGCGGCATGTCTTTGACCAA
AATGGTATCAAAGGAGCAATTGCTGCAGTGGCAAAGTTGCCCGACAATGCAGTTCAAGCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41057.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis