Browse Element(s) Details


Os.41695.2.S1_x_at

Description gb:NM_196401.1
DB_XREF= gi:37534161
TID=Os.41695.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.41695 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) putative transposable element (OSJNBa0044A10.18), mRNA.
PROD=putative transposable element
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2636011/11transposon protein, putative, Mutator sub-class
LOC_Os10g3756010/11expressed protein
LOC_Os07g4143010/11transposon protein, putative, Mutator sub-class
LOC_Os11g3183010/11Transposable element protein, putative, MuDR
LOC_Os01g2874010/11transposon protein, putative, Mutator sub-class
LOC_Os08g2899010/11transposon protein, putative, Mutator sub-class
LOC_Os07g4602010/11transposon protein, putative, Mutator sub-class
LOC_Os04g1252010/11transposon protein, putative, Mutator sub-class
LOC_Os11g392309/11hypothetical protein
LOC_Os05g254709/11transposon protein, putative, Mutator sub-class
LOC_Os12g295309/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os03g460809/11Transposable element protein, putative, MuDR
LOC_Os10g072489/11transposon protein, putative, Mutator sub-class
LOC_Os07g104708/11Zinc knuckle family protein
LOC_Os03g023708/11calcineurin-like phosphoesterase family protein, putative
LOC_Os05g360608/11transposon protein, putative, Mutator sub-class
LOC_Os05g050908/11Transposable element protein, putative, MuDR
LOC_Os04g077848/11transposon protein, putative, Mutator sub-class
LOC_Os03g246307/11hypothetical protein
LOC_Os08g270007/11Zinc knuckle family protein
LOC_Os09g291807/11hypothetical protein
LOC_Os03g471305/11transposon protein, putative, Mutator sub-class
LOC_Os04g234705/11transposon protein, putative, Mutator sub-class
LOC_Os02g032405/11transposon protein, putative, Mutator sub-class
LOC_Os05g079205/11transposon protein, putative, Mutator sub-class
LOC_Os10g177105/11calcineurin-like phosphoesterase family protein, putative
LOC_Os01g099605/11SWIM zinc finger family protein
LOC_Os06g080704/11transposon protein, putative, Mutator sub-class
LOC_Os02g474804/11hypothetical protein
LOC_Os11g145904/11hypothetical protein
LOC_Os01g508004/11hypothetical protein
LOC_Os06g388903/11hypothetical protein
LOC_Os01g184703/11transposon protein, putative, Mutator sub-class
LOC_Os04g054603/11hypothetical protein
LOC_Os01g297503/11SWIM zinc finger family protein
LOC_Os07g470103/11SWIM zinc finger family protein
LOC_Os12g080803/11Transposable element protein, putative, MuDR
LOC_Os03g180602/11transposon protein, putative, Mutator sub-class, expressed
LOC_Os06g290502/11transposon protein, putative, Mutator sub-class
LOC_Os08g199702/11Transposable element protein, putative, MuDR
LOC_Os06g229901/11hypothetical protein
LOC_Os07g298401/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g26320OsAffx.30541.1.S1_at11/1110+13315054..13315323hypothetical protein
LOC_Os10g26330OsAffx.8146.1.S1_at11/1110+13319547..13320264retrotransposon protein, putative, unclassified
LOC_Os10g26340OsAffx.28856.1.S1_x_at1/1110+13327360..13329113Cytochrome P450 78A11, putative, expressed
LOC_Os10g26349NANA10+13332364..13332712NA
LOC_Os10g26360Os.41695.2.S1_x_at11/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.15.S1_s_at11/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.3.S1_x_at10/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.5.S1_x_at7/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26360Os.41695.4.S1_x_at1/1110+13334726..13341459transposon protein, putative, Mutator sub-class
LOC_Os10g26370Os.46306.1.S1_x_at5/1110+13345039..13357452transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g26370Os.45976.1.S1_x_at3/1110+13345039..13357452transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009626biological_processhypersensitive response
GO:0019897cellular_componentextrinsic to plasma membrane
GO:0000166molecular_functionnucleotide binding
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.41695.2.S1_x_at--1019--5552Chr10:13335852..13335876 (25 bp)
GAAAGCTCCTCAGGAGTGTGAATGA
LOC_Os10g26360
Os.41695.2.S1_x_at--1037--24717Chr09:17739988..17740011 (24 bp)
AACACGCTCCGCAATGTTTTAGAGA
LOC_Os09g29180
Os.41695.2.S1_x_at--805--32932Chr11:8214657..8214681 (25 bp)
CAAAGGTGCCGGAAACTTGCAGCAA
LOC_Os11g14590
Os.41695.2.S1_x_at--42--34134Chr11:8214676..8214700 (25 bp)
CAGCAAGATTAGGTTGCAGGTCGGT
LOC_Os11g14590
Os.41695.2.S1_x_at--687--94334Chr11:8214696..8214720 (25 bp)
TCGGTTGGATTGGACGACGTGTACC
LOC_Os11g14590
Os.41695.2.S1_x_at--674--73526Chr10:8620497..8620521 (25 bp)
GTGAAGGAGTTGGTGGCTCGTCGTC
LOC_Os10g17710
Os.41695.2.S1_x_at--369--37927Chr10:8620513..8620537 (25 bp)
CTCGTCGTCGTCACGCATTAAGCAA
LOC_Os10g17710
Os.41695.2.S1_x_at--1081--71924Chr10:3806198..3806222 (25 bp)
GTCGTCGTCACGCATTAAGCAAGGG
LOC_Os10g07248
Os.41695.2.S1_x_at--1068--60321Chr10:3806313..3806337 (25 bp)
GAGATAGACATGTCACAGCTTCCCG
LOC_Os10g07248
Os.41695.2.S1_x_at--418--81133Chr11:8214970..8214994 (25 bp)
GGACGCAACCCACGCAATACAACTT
LOC_Os11g14590
Os.41695.2.S1_x_at--1157--5325Chr10:3806378..3806889 (25 bp)
ATCCACTCGGGCAGCGAAAAGGAGG
LOC_Os10g07248
Target Sequence 
GAAAGCTCCTCAGGAGTGTGAATGAAATGGGGCATGCCCTCCAAGCTCCGAGGGGTGGTGAGGACACGGAGAACACGCTC
CGCAATGTTTTAGAGAAAGTTCGTCAAAGGTGCCGGAAACTTGCAGCAAGATTAGGTTGCAGGTCGGTTGGATTGGACGA
CGTGTACCAACCGGGGAGACTACCACCACCACTACCTCAATCCGCGCGTCCAAGTACTGCTCGACACTCTATCAGGATAG
AAGAGCGTGAAGGAGTTGGTGGCTCGTCGTCGTCACGCATTAAGCAAGGGAGGGGAAAGGGGAAGGCGCCGGCTCCACCT
AGCGACGACGATGACGATGAGGACGAGGAGGATGAGGACTACGTCGCACCAGACGCCGAGGAGATAGACATGTCACAGCT
TCCCGACGCGCCTCAGGGGACGCAACCCACGCAATACAACTTGCGATCCACTCGGGCAGCGAAAAGGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.41695.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis