Browse Element(s) Details


Os.42032.1.S1_at

Description gb:NM_191398.1
DB_XREF= gi:34909879
GEN=B1143G03.5
TID=Os.42032.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.42032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) B1143G03.5 (B1143G03.5), mRNA
DEF=Oryza sativa (japonica cultivar-group) B1143G03.5 (B1143G03.5), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5626010/11expressed protein
LOC_Os12g359505/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g56200Os.15117.1.S1_at11/111+32694609..32698662Regulatory protein NPR1, putative, expressed
LOC_Os01g56210OsAffx.23805.1.S1_at11/111+32698830..32699717expressed protein
LOC_Os01g56220Os.9154.1.S1_at11/111+32706608..32707430expressed protein
LOC_Os01g56230OsAffx.23806.1.S1_x_at11/111+32708058..32712542expressed protein
LOC_Os01g56230Os.25486.1.S1_at11/111+32708058..32712542expressed protein
LOC_Os01g56240OsAffx.23807.1.S1_x_at11/111+32717215..32717645Auxin responsive protein, expressed
LOC_Os01g56250OsAffx.29313.1.S1_at1/111+32720238..32722846hypothetical protein
LOC_Os01g56260Os.42032.1.S1_at10/111+32723284..32727004expressed protein
LOC_Os01g56270Os.49365.1.S1_at11/111+32735130..32740445transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os01g56280Os.14919.1.S1_at1/111+32741923..32744159hypothetical protein
LOC_Os01g56290OsAffx.23808.2.S1_x_at11/111+32751304..32754355expressed protein
LOC_Os01g56290Os.49991.1.S1_at11/111+32751304..32754355expressed protein
LOC_Os01g56290OsAffx.23808.2.S1_at8/111+32751304..32754355expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.42032.1.S1_at--266--9871Chr01:32725358..32725382 (25 bp)
TACAGTGAATGACTCATCATCGGAT
LOC_Os01g56260
Os.42032.1.S1_at--589--132Chr12:21941257..21941281 (25 bp)
ATTAGTCAAAACACTGGGTCAGCGT
LOC_Os12g35950
Os.42032.1.S1_at--863--3332Chr12:21941268..21941292 (25 bp)
CACTGGGTCAGCGTATTGAGGAGTT
LOC_Os12g35950
Os.42032.1.S1_at--914--2632Chr12:21941325..21941486 (25 bp)
AACCAACTATGGCAACATCTCAGAG
LOC_Os12g35950
Os.42032.1.S1_at--1153--252Chr12:21941794..21941818 (25 bp)
ATATGCACCATGACAATATTCTGGA
LOC_Os12g35950
Os.42032.1.S1_at--897--3112Chr12:21941808..21941832 (25 bp)
AATATTCTGGATCTTTGTGGCAAAA
LOC_Os12g35950
Os.42032.1.S1_at--645--1451Chr01:32723952..32723976 (25 bp)
AGAAGACTGCACATCACATGGCCCA
LOC_Os01g56260
Os.42032.1.S1_at--351--3491Chr01:32723936..32723960 (25 bp)
CATGGCCCAAAATAGGGTGCATTCT
LOC_Os01g56260
Os.42032.1.S1_at--880--7771Chr01:32723922..32723945 (24 bp)
GGTGCATTCTTCTTCAGTGAAGGTT
LOC_Os01g56260
Os.42032.1.S1_at--309--5311NONE
GAAGGTTGGTACCACAATAATCTTG
NONE
Os.42032.1.S1_at--847--7911Chr01:32723676..32723700 (25 bp)
GGTTGTCAATCATCCACTTAAGGAA
LOC_Os01g56260
Target Sequence 
TACAGTGAATGACTCATCATCGGATGAAGAGACACATGTTAGAGGGGAAGTGGGGGAATTAAAAAAATTAGTCAAAACAC
TGGGTCAGCGTATTGAGGAGTTGGAAAACAAAGGAACAAGCAATGGGAATAGTGAACCAACTATGGCAACATCTCAGAGA
ACTTTTGATGATGGTATTGAAGAGGGAGTAGTACGGACTAATAGAAAGAACAAAAGAAGATGTGAGGAACAGCAAAATAT
GCACCATGACAATATTCTGGATCTTTGTGGCAAAAAGATGAATAAAAAGAAGCACCGAAATTTAGAGAAATTTGCAAAGA
CTACAGAAAAACAGGACACTCAGAAGAAGACTGCACATCACATGGCCCAAAATAGGGTGCATTCTTCTTCAGTGAAGGTT
GGTACCACAATAATCTTGGTGACTGCAAAATATCCTAACAAAGAAACTGTGGCATATGCTACTTATTTGAGTAGTAACCC
AAGAGACAAAGTGGATGGTGTTGAGATTGGTAACGAGTTCACTAAAGTGGTTGTCAATCATCCACTTAAGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.42032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis